Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 76.97% |
Matrix_31 | SPL1 | Not Available | | 75.71% |
Matrix_85 | SPL5 | Not Available | | 73.45% |
Matrix_451 | STY1 | Not Available | | 72.19% |
Matrix_137 | SPL1; SPL12 | Not Available | | 69.36% |
Matrix_33 | SPL11; SPL10; SPL2 | Not Available | | 68.52% |
Matrix_328 | AT1G76580 | Not Available | | 67.54% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 67.21% |
Matrix_254 | MYB52 | Not Available | | 65.73% |
Matrix_450 | SPL7 | Not Available | | 65.47% |
Motif_167 | SBP-box promoter motif | Molecular characterisation of the Arabidopsis SBP-box genes | | 65.10% |
Matrix_38 | SPL14 | Not Available | | 64.44% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 63.68% |
Motif_568 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 63.03% |
Motif_161 | SPL7; SPL4 | A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors | | 62.25% |
Motif_674 | SPL4; SPL1; SPL5 | Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors | | 61.96% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 61.96% |
Matrix_416 | ASL5 | Not Available | | 59.72% |
Motif_244 | ABRE-like binding site motif | Not Available | | 59.66% |
Matrix_292 | FTQ4 | Not Available | | 59.09% |
Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | | 58.72% |
Matrix_237 | MYB55 | Not Available | | 58.59% |
Motif_429 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 58.59% |
Matrix_332 | SPT; ALC | Not Available | | 58.32% |
Motif_233 | DRE1COREZMRAB17 | DRE1 core found in maize rab17 gene promoter; DRE1 was protected, in in vivo footprinting, by a protein in embryos specifically, but in leaves, was protected when was treated with ABA and drought; rab17 is expressed during late embryogenesis, and is induced by ABA | | 58.21% |
Matrix_26 | ATMYB3; MYB24 | Not Available | | 57.75% |
Matrix_307 | RGL2; RGL3 | Not Available | | 57.33% |
Motif_516 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 57.28% |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 57.16% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 56.67% |
Motif_638 | ABRE binding site motif | Not Available | | 56.67% |
Matrix_66 | AtLEC2 | Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis | | 56.66% |
Matrix_53 | MYC3 | Not Available | | 56.57% |
Matrix_161 | MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570 | Not Available | | 56.50% |
Matrix_162 | AtPHR1 | Not Available | | 56.37% |
Matrix_165 | KNAT1 | Not Available | | 56.30% |
Matrix_221 | SPL7 | Not Available | | 56.30% |
Matrix_9 | AT5G04760 | Not Available | | 56.12% |
Matrix_156 | POC1 | Not Available | | 56.00% |
Matrix_520 | ARR14 | Not Available | | 55.76% |
Matrix_387 | ORA47 | Not Available | | 55.42% |
Matrix_285 | DDF1 | Not Available | | 55.21% |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | | 55.17% |
Matrix_176 | MYB98 | Not Available | | 55.16% |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | | 54.90% |
Matrix_170 | AT5G47660 | Not Available | | 54.84% |
Motif_4 | NAP | An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves | | 54.77% |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | | 54.56% |
Matrix_410 | TOE2 | Not Available | | 54.53% |
Matrix_327 | ARR11 | Not Available | | 54.42% |
Matrix_139 | OBF5 | Not Available | | 54.38% |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 54.33% |
Matrix_69 | AT2G03500 | Not Available | | 54.25% |
Matrix_402 | TOE1 | Not Available | | 54.22% |
Matrix_209 | RAP2.6 | Not Available | | 54.21% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 54.19% |
Matrix_457 | TGA2 | Not Available | | 54.16% |
Motif_477 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 54.11% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 54.05% |
Matrix_134 | ABF1 | Not Available | | 54.00% |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | | 53.88% |
Motif_124 | ABREMOTIFIIIOSRAB16B | Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other | | 53.80% |
Matrix_3 | WRKY48 | Not Available | | 53.67% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 53.62% |
Matrix_504 | WRKY40 | Not Available | | 53.57% |
Matrix_75 | WRKY29 | Not Available | | 53.51% |
Matrix_188 | SPL4 | Not Available | | 53.43% |
Motif_140 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 53.34% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 53.33% |
Matrix_40 | TCP2 | Not Available | | 53.33% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 53.30% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 53.27% |
Matrix_405 | DREB2C | Not Available | | 53.27% |
Matrix_489 | RAV1 | Not Available | | 53.21% |
Motif_465 | AtMYB44 | Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants | | 53.08% |
Matrix_7 | PIF4 | Not Available | | 52.96% |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | | 52.93% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 52.91% |
Matrix_361 | AT1G25550 | Not Available | | 52.77% |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | | 52.71% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 52.64% |
Matrix_494 | OBP4 | Not Available | | 52.50% |
Matrix_324 | AT2G01060 | Not Available | | 52.47% |
Matrix_423 | AT3G04030 | Not Available | | 52.43% |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | | 52.38% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 52.38% |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | | 52.35% |
Matrix_511 | AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180 | Not Available | | 52.28% |
Matrix_192 | FHY3/FAR1 | Not Available | | 52.27% |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | | 52.24% |
Matrix_478 | AT1G01250 | Not Available | | 52.20% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 52.19% |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | | 52.16% |
Matrix_470 | WRKY18 | Not Available | | 52.05% |
Matrix_17 | WRKY22 | Not Available | | 52.01% |
Motif_356 | S2FSORPL21 | S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site | | 52.01% |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | | 51.95% |
Matrix_378 | ATERF1 | Not Available | | 51.89% |
Matrix_234 | RAP2.3 | Not Available | | 51.86% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 51.84% |
Matrix_343 | AT2G33710 | Not Available | | 51.82% |
Matrix_349 | CDC5 | Not Available | | 51.81% |
Matrix_187 | CDC5 | Not Available | | 51.81% |
Matrix_247 | PIF3 | Not Available | | 51.72% |
Matrix_286 | GATA7 | Not Available | | 51.69% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 51.67% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 51.60% |
Matrix_210 | ARR1 | Not Available | | 51.59% |
Matrix_148 | WRKY60 | Not Available | | 51.56% |
Matrix_4 | ARR14 | Not Available | | 51.51% |
Matrix_473 | RRTF1 | Not Available | | 51.44% |
Matrix_376 | WRKY45 | Not Available | | 51.38% |
Matrix_320 | MYC4 | Not Available | | 51.35% |
Matrix_236 | CCA1 | Not Available | | 51.34% |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | | 51.29% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 51.25% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 51.22% |
Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 51.21% |
Matrix_373 | E2FE | Not Available | | 51.17% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 51.14% |
Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 51.13% |
Matrix_60 | AT1G01260; AT5G57150 | Not Available | | 51.06% |
Motif_250 | ACGTOSGLUB1 | ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression | | 51.05% |
Motif_322 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 51.00% |
Matrix_65 | POC1; PIL1 | Not Available | | 51.00% |
Matrix_150 | UNE10; PIF7 | Not Available | | 50.99% |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | | 50.97% |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 50.96% |
Matrix_415 | WRKY27 | Not Available | | 50.82% |
Matrix_426 | CRF1; CRF2 | Not Available | | 50.81% |
Matrix_369 | AT2G18300 | Not Available | | 50.78% |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | | 50.73% |
Matrix_230 | ARR11 | Not Available | | 50.70% |
Matrix_367 | REM1 | Not Available | | 50.68% |
Matrix_365 | AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1 | Not Available | | 50.65% |
Matrix_113 | ABI5 | Not Available | | 50.60% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 50.60% |
Matrix_406 | ATERF-7 | Not Available | | 50.57% |
Matrix_195 | GATA2; GATA4 | Not Available | | 50.57% |
Matrix_175 | Dof5.7 | Not Available | | 50.55% |
Matrix_460 | NAM; anac025; ATNAC2 | Not Available | | 50.51% |
Motif_238 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 50.49% |
Matrix_357 | WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72 | Not Available | | 50.43% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 50.42% |
Motif_500 | D1GMAUX28 | D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner | | 50.40% |
Matrix_1 | TOE2 | Not Available | | 50.35% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 50.35% |
Matrix_352 | LEC2 | Not Available | | 50.31% |
Matrix_99 | DOF4.7 | Not Available | | 50.31% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 50.29% |
Matrix_389 | ILR3 | Not Available | | 50.28% |
Motif_308 | SP8BFIBSP8AIB | One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 50.25% |
Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 50.24% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 50.22% |
Matrix_388 | SNZ; SMZ; TOE2 | Not Available | | 50.10% |