PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_112
Name: TBP2; TFIID-1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_100	AT1G48610	Not Available	79.35%
Matrix_35	YAB5; YAB3	Not Available	77.74%
Matrix_96	TMO6	Not Available	70.66%
Matrix_126	RBE	Not Available	69.57%
Matrix_239	AT5G04390	Not Available	69.17%
Matrix_503	AT2G37430; AT3G53600	Not Available	67.51%
Matrix_198	STZ; C2H2; AZF3	Not Available	67.50%
Matrix_379	RHL41	Not Available	66.94%
Matrix_425	TIFY2A	Not Available	66.86%
Matrix_519	ATDOF2.4	Not Available	65.09%
Matrix_436	AT3G49930; AZF1	Not Available	64.66%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	62.49%
Matrix_78	AT3G45610	Not Available	61.59%
Matrix_248	ZFP5	Not Available	61.58%
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	61.25%
Matrix_177	ADOF2	Not Available	60.67%
Matrix_411	DOF5.6	Not Available	59.13%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	58.59%
Matrix_84	AtGRF6	Not Available	58.07%
Matrix_27	ATAIB; ATNIG1	Not Available	56.29%
Matrix_341	HMGA	Not Available	56.25%
Matrix_241	HB-1; AT5G44180	Not Available	56.18%
Matrix_442	AT5G62260	Not Available	55.87%
Matrix_114	EPR1; AT3G10113	Not Available	55.21%
Matrix_218	TIFY2B; TIFY1	Not Available	54.95%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.69%
Motif_667	TATABOXOSPAL	Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter	54.68%
Motif_370	TATABOX2	TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	54.49%
Matrix_274	EDF3	Not Available	52.98%
Matrix_142	ZFP8	Not Available	52.34%
Matrix_46	AT4G21895	Not Available	52.03%
Matrix_513	SOL1; TSO1; TCX2	Not Available	51.69%
Matrix_163	AT2G20110	Not Available	50.72%
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	50.59%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	50.58%
Matrix_65	POC1; PIL1	Not Available	50.19%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	50.10%
Matrix_99	DOF4.7	Not Available	50.06%