Matrix_174 | ZAT2 | Not Available | | 71.44% |
Matrix_511 | AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180 | Not Available | | 64.93% |
Motif_334 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 64.57% |
Matrix_472 | ZN_C2_H2 | Not Available | | 63.75% |
Motif_477 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 61.87% |
Matrix_87 | AT1G19000 | Not Available | | 60.91% |
Matrix_221 | SPL7 | Not Available | | 59.81% |
Motif_554 | AtLHY; AtCCA1 | LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms | | 59.75% |
Matrix_188 | SPL4 | Not Available | | 59.32% |
Matrix_211 | MYB3 | Not Available | | 59.32% |
Matrix_204 | WOX13 | Not Available | | 59.19% |
Matrix_273 | ANAC55 | Not Available | | 58.34% |
Matrix_41 | anac058 | Not Available | | 58.08% |
Matrix_274 | EDF3 | Not Available | | 58.06% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 57.42% |
Motif_535 | ACIPVPAL2 | ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene | | 57.32% |
Matrix_388 | SNZ; SMZ; TOE2 | Not Available | | 57.09% |
Motif_377 | SURE2STPAT21 | Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato | | 57.04% |
Matrix_476 | bHLH115; bHLH34 | Not Available | | 56.51% |
Motif_53 | ABREA2HVA1 | A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3 | | 56.31% |
Matrix_137 | SPL1; SPL12 | Not Available | | 56.27% |
Matrix_233 | MYC3 | Not Available | | 56.18% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 56.07% |
Matrix_193 | RAV1 | Not Available | | 56.04% |
Matrix_265 | NGA3 | Not Available | | 56.04% |
Matrix_333 | GATA3 | Not Available | | 55.99% |
Matrix_320 | MYC4 | Not Available | | 55.85% |
Matrix_327 | ARR11 | Not Available | | 55.74% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 55.72% |
Matrix_169 | E2F1 | Not Available | | 55.68% |
Matrix_260 | CAMTA3 | Not Available | | 55.63% |
Matrix_203 | GATA9; GATA12 | Not Available | | 55.54% |
Matrix_437 | MYC2 | Not Available | | 55.52% |
Matrix_21 | HSFC1 | Not Available | | 55.38% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 55.37% |
Matrix_70 | GATA26 | Not Available | | 55.34% |
Matrix_247 | PIF3 | Not Available | | 55.21% |
Motif_166 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 55.19% |
Motif_475 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 55.19% |
Matrix_1 | TOE2 | Not Available | | 55.04% |
Motif_546 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 54.95% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 54.90% |
Matrix_424 | MYB59 | Not Available | | 54.85% |
Motif_5 | SORLREP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 54.77% |
Matrix_422 | TOE1 | Not Available | | 54.68% |
Matrix_299 | PFG3 | Not Available | | 54.49% |
Matrix_60 | AT1G01260; AT5G57150 | Not Available | | 54.39% |
Matrix_365 | AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1 | Not Available | | 54.35% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 54.30% |
Matrix_393 | REM1 | Not Available | | 54.21% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 53.97% |
Matrix_470 | WRKY18 | Not Available | | 53.92% |
Matrix_150 | UNE10; PIF7 | Not Available | | 53.90% |
Matrix_225 | MYB52 | Not Available | | 53.69% |
Matrix_319 | TEM1 | Not Available | | 53.51% |
Matrix_411 | DOF5.6 | Not Available | | 53.51% |
Motif_172 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 53.48% |
Motif_296 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 53.47% |
Matrix_129 | ABF1 | Not Available | | 53.44% |
Matrix_337 | MYB46 | Not Available | | 53.41% |
Matrix_141 | AT3G25990 | Not Available | | 53.39% |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 53.39% |
Motif_590 | MYB3 binding site motif | Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses | | 53.30% |
Matrix_166 | TGA4 | Not Available | | 53.23% |
Motif_568 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 53.11% |
Matrix_182 | ATHB6 | Not Available | | 53.10% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 52.90% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 52.84% |
Matrix_354 | AHL12 | Not Available | | 52.78% |
Matrix_362 | DEAR3 | Not Available | | 52.73% |
Matrix_254 | MYB52 | Not Available | | 52.71% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 52.69% |
Motif_553 | BOX2PSGS2 | Box 2 in glutamine synthetase (GS2) gene in pea; Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2 | | 52.63% |
Matrix_332 | SPT; ALC | Not Available | | 52.60% |
Matrix_367 | REM1 | Not Available | | 52.58% |
Matrix_177 | ADOF2 | Not Available | | 52.48% |
Motif_202 | OPAQUE2ZM22Z | Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02 | | 52.46% |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | | 52.41% |
Motif_384 | SITEIOSPCNA | Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation | | 52.41% |
Matrix_420 | ANAC58 | Not Available | | 52.41% |
Matrix_159 | TEM2 | Not Available | | 52.39% |
Matrix_308 | INO | Not Available | | 52.36% |
Matrix_291 | EDF3 | Not Available | | 52.24% |
Matrix_315 | MYB111 | Not Available | | 52.22% |
Matrix_512 | HAT3 | Not Available | | 52.16% |
Matrix_116 | ANAC55 | Not Available | | 52.09% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 52.08% |
Matrix_311 | TGA1 | Not Available | | 51.97% |
Matrix_120 | BEE2 | Not Available | | 51.96% |
Matrix_71 | ATHB7 | Not Available | | 51.94% |
Matrix_307 | RGL2; RGL3 | Not Available | | 51.78% |
Matrix_84 | AtGRF6 | Not Available | | 51.77% |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | | 51.61% |
Matrix_410 | TOE2 | Not Available | | 51.57% |
Matrix_518 | AT2G21230 | Not Available | | 51.55% |
Matrix_170 | AT5G47660 | Not Available | | 51.45% |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | | 51.31% |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 51.22% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 51.20% |
Matrix_145 | GBF4; AT5G44080 | Not Available | | 51.19% |
Motif_465 | AtMYB44 | Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants | | 51.15% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 51.12% |
Matrix_396 | AP3 | Not Available | | 51.08% |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | | 51.07% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 51.04% |
Matrix_371 | MYB7; AtMYB6; AtMYB32; ATMYB4 | Not Available | | 51.04% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 50.85% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 50.85% |
Matrix_469 | NAC041; NAC083 | Not Available | | 50.78% |
Matrix_450 | SPL7 | Not Available | | 50.75% |
Motif_61 | PALBOXLPC | Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation | | 50.67% |
Matrix_37 | GATA27 | Not Available | | 50.64% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 50.59% |
Motif_138 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 50.55% |
Matrix_463 | HAT3.1 | Not Available | | 50.50% |
Motif_213 | ZML2 | The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis | | 50.44% |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | | 50.33% |
Motif_692 | MYB80 | The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana | | 50.32% |
Motif_22 | RYREPEATLEGUMINBOX | RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean | | 50.31% |
Matrix_64 | PIF5 | Not Available | | 50.29% |
Motif_198 | CARGATCONSENSUS | CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO) | | 50.28% |
Matrix_165 | KNAT1 | Not Available | | 50.23% |
Matrix_17 | WRKY22 | Not Available | | 50.22% |
Matrix_519 | ATDOF2.4 | Not Available | | 50.14% |
Matrix_447 | RVE1 | Not Available | | 50.11% |
Motif_73 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 50.11% |
Matrix_220 | WRKY18 | Not Available | | 50.04% |
Matrix_416 | ASL5 | Not Available | | 50.03% |