Tree Explorer: HOM03D000699  

Viewing
Species colored phylogenetic tree with associated protein domains.
Warning
The stripped multiple sequence alignment used to infer the phylogenetic tree is only 50 amino acids long

View...


Protein domain view



Archaeopteryx/Forester requires at least Java 1.5 To determine which version of Java your web browser is using, please visit javatester

Legend

IPR011598
    Myc-type, basic helix-loop-helix (bHLH) domain
IPR024097
    Basic helix-loop-helix leucine zipper transcription factor
IPR016140
    Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
IPR024102
    Basic helix-loop-helix leucine zipper transcription factor, plant
Protein domains lacking coordinates are not displayed in the phylogenetic tree. This may appear to cause inconsistencies between the various pages also showing InterPro domain information.

Download

Download Newick Download PhyloXML

Multiple Sequence Alignment information

Method
muscle
Length
1168
View alignment of the entire gene family
Stripped length
50
View edited alignment used for tree construction

Outlier/stripped gene information

Gene id Status Cause
PT09G08900 removed too diverged
OS07G39940 removed too diverged
AT2G14760 removed too diverged
OS11G41640 removed too diverged
PPI00005813 removed too diverged
PGL00023787 removed too diverged
AT5G61270 removed too diverged
AT4G33880 removed too diverged
PAB00044109 removed too diverged
PGL00024943 removed too diverged
PT01G29430 removed too diverged
ATR_00164G00270 removed too diverged
OS03G55550 removed too diverged
PTA00072973 removed partial
PME00067177 removed partial
GBI00023155 removed partial
GMO00022501 removed partial
PME00067182 removed partial
PAB00004001 removed partial
AT1G68240 removed outlier
CMI00014641 removed outlier
GBI00000827 removed outlier
GBI00003216 removed outlier
GBI00013173 removed outlier
GMO00028381 removed outlier
GMO00028796 removed outlier
OS01G05550 removed outlier
OS06G47980 removed outlier
OS08G27330 removed outlier
OS12G40630 removed outlier
OS12G40730 removed outlier
PME00067178 removed outlier
PME00067179 removed outlier
PME00067180 removed outlier
PME00067181 removed outlier
PPI00005716 removed outlier
PTA00019291 removed outlier
TBA00015183 removed outlier