The Plant Genome Integrative Explorer Resource:

  • Accessing and exploring large-scale genomics datasets remains a significant challenge to researches without specialist bioinformatics training.
  • We present the integrated platform for exploration of Populus, conifer and Arabidopsis genomics data, including expression networks and associated visualisation tools. Standard features of a model organism database are provided, including genome browsers, gene list annotation, BLAST homology searches and gene information pages. Community annotation updating is supported via integration of WebApollo.
  • We have produced an RNA-Seq expression atlas for Populus tremula and have integrated these data within the expression tools.
  • PlantGenIE integrates an updated version of the ComPlEx resource for performing Comparative Plant Expression analyses of gene co-expression network conservation between species.
  • The platform provides intuitive access to large-scale and genome-wide genomics data from model forest tree species, facilitating both community contributions to annotation improvement and tools supporting use of the included data resources to inform biological insight.

Sundell, D., Mannapperuma, C., Netotea, S., Delhomme, N., Lin, Y.-C., Sjödin, A., Van de Peer, Y., Jansson, S., Hvidsten, T. R., Street, N. R. (2015) The Plant Genome Integrative Explorer Resource: New Phytol. 208(4):1149-56.

VIB / UGent
Bioinformatics & Evolutionary Genomics
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