Oryza sativa ssp. indica
Oryza sativa indica is a subspecies of the Oryza sativa (commonly known as rice) species. Rice is a major food staple of the world's population, and after the sequencing of the monot model species Oryza sativa japonica, BGI sequenced the indica variety. Both subspecies are of course highly similar in genomic content.
Publication:
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296, 79-92 (2002)
Info and Links
Source | 9311_BGF_2005 |
PLAZA identifier | osaindica |
NCBI link | Oryza sativa ssp. indica |
Mitochondrion | DQ167399 | Chloroplast | AY522329 |
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Annotations
Page 1 of 2972, showing 20 records out of 59430 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Gene family |
---|---|---|---|---|---|---|---|
OSINDICA_00G00010 | OSINDICA_00G00010.1 | 2970 | 3656 | - | Scaffold019076 | coding | HOM03M000029 |
OSINDICA_00G00020 | OSINDICA_00G00020.1 | 21 | 3366 | - | Scaffold019078 | coding | HOM03M002082 |
OSINDICA_00G00030 | OSINDICA_00G00030.1 | 634 | 1632 | + | Scaffold019077 | coding | HOM03M000034 |
OSINDICA_00G00040 | OSINDICA_00G00040.1 | 1853 | 3102 | - | Scaffold019077 | coding | HOM03M013018 |
OSINDICA_00G00050 | OSINDICA_00G00050.1 | 487 | 1902 | - | Scaffold028291 | coding | HOM03M007832 |
OSINDICA_00G00060 | OSINDICA_00G00060.1 | 4571 | 5292 | - | Supscaffold419 | coding | HOM03M001973 |
OSINDICA_00G00070 | OSINDICA_00G00070.1 | 7314 | 10574 | - | Supscaffold419 | coding | HOM03M000002 |
OSINDICA_00G00080 | OSINDICA_00G00080.1 | 206 | 3381 | + | Scaffold020362 | coding | HOM03M006787 |
OSINDICA_00G00090 | OSINDICA_00G00090.1 | 1638 | 2420 | - | Scaffold024518 | coding | orphan gene |
OSINDICA_00G00100 | OSINDICA_00G00100.1 | 2457 | 2960 | - | Scaffold021774 | coding | HOM03M009859 |
OSINDICA_00G00110 | OSINDICA_00G00110.1 | 2517 | 2990 | - | Scaffold020364 | coding | HOM03M004996 |
OSINDICA_00G00120 | OSINDICA_00G00120.1 | 95 | 1177 | - | Scaffold019070 | coding | HOM03M003801 |
OSINDICA_00G00130 | OSINDICA_00G00130.1 | 1481 | 2801 | + | Scaffold019070 | coding | HOM03M003276 |
OSINDICA_00G00140 | OSINDICA_00G00140.1 | 3333 | 3761 | - | Scaffold019070 | coding | HOM03M009192 |
OSINDICA_00G00150 | OSINDICA_00G00150.1 | 1823 | 2921 | - | Supscaffold417 | te | |
OSINDICA_00G00160 | OSINDICA_00G00160.1 | 9717 | 10262 | + | Supscaffold417 | coding | HOM03M019537 |
OSINDICA_00G00170 | OSINDICA_00G00170.1 | 79 | 1914 | - | Supscaffold418 | coding | HOM03M000146 |
OSINDICA_00G00180 | OSINDICA_00G00180.1 | 3304 | 4579 | - | Supscaffold418 | te | |
OSINDICA_00G00190 | OSINDICA_00G00190.1 | 6260 | 9346 | + | Supscaffold418 | te | |
OSINDICA_00G00200 | OSINDICA_00G00200.1 | 1294 | 2112 | + | Scaffold028612 | coding | HOM03M000610 |