Download section
All downloads are also available from ftp-directory : ftp directoryFile | Description |
---|---|
PLAZA_PGE_poster.pptx | Poster for PLAZA 2.5 |
PLAZA_flyer_2.5.pdf | Flyer presenting the capabilities of the PLAZA 2.5 platform. |
PLAZA_flyer_3.0.pdf | Flyer presenting the capabilities of the PLAZA 3.0 platform. |
PLAZA_presentation.ppt | Presentation on the standard capabilities of PLAZA, including several frequently asked questions on topics concerning wetlab research. Presented at PSB Weekly Science Meeting 2010-01-22. |
Species | Annotation (CSV) | Annotation (GFF) |
---|---|---|
Arabidopsis thaliana | Not Available | Not Available |
Brachypodium distachyon | Not Available | Not Available |
Carica papaya | Not Available | Not Available |
Chlamydomonas reinhardtii | Not Available | Not Available |
Hordeum vulgare | Not Available | Not Available |
Musa acuminata | Not Available | Not Available |
Oryza sativa ssp. indica | Not Available | Not Available |
Oryza sativa ssp. japonica | Not Available | Not Available |
Ostreococcus lucimarinus | Not Available | Not Available |
Physcomitrella patens | Not Available | Not Available |
Populus trichocarpa | Not Available | Not Available |
Setaria italica | Not Available | Not Available |
Solanum lycopersicum | Not Available | Not Available |
Sorghum bicolor | Not Available | Not Available |
Vitis vinifera | Not Available | Not Available |
Zea mays | Not Available | Not Available |
All species | Not Available | Not Available |
Species | ID conversion |
---|---|
Arabidopsis thaliana | id_conversion.ath.csv.gz (350.81 KB) |
Brachypodium distachyon | id_conversion.bdi.csv.gz (279.71 KB) |
Carica papaya | id_conversion.cpa.csv.gz (159.42 KB) |
Chlamydomonas reinhardtii | id_conversion.cre.csv.gz (179.34 KB) |
Hordeum vulgare | id_conversion.hvu.csv.gz (378.70 KB) |
Musa acuminata | id_conversion.mac.csv.gz (516.71 KB) |
Oryza sativa ssp. indica | id_conversion.osaindica.csv.gz (305.87 KB) |
Oryza sativa ssp. japonica | id_conversion.osa.csv.gz (311.63 KB) |
Ostreococcus lucimarinus | id_conversion.olu.csv.gz (48.90 KB) |
Physcomitrella patens | id_conversion.ppa.csv.gz (275.67 KB) |
Populus trichocarpa | id_conversion.ptr.csv.gz (425.01 KB) |
Setaria italica | id_conversion.sit.csv.gz (674.08 KB) |
Solanum lycopersicum | id_conversion.sly.csv.gz (180.25 KB) |
Sorghum bicolor | id_conversion.sbi.csv.gz (231.88 KB) |
Vitis vinifera | id_conversion.vvi.csv.gz (142.88 KB) |
Zea mays | id_conversion.zma.csv.gz (480.14 KB) |
All species | Not Available |
Species | CDS files | Protein files | Genome files |
---|---|---|---|
Arabidopsis thaliana | Not Available | Not Available | ath.con.gz (34.28 MB) |
Brachypodium distachyon | Not Available | Not Available | bdi.con.gz (76.24 MB) |
Carica papaya | Not Available | Not Available | cpa.con.gz (80.80 MB) |
Chlamydomonas reinhardtii | Not Available | Not Available | cre.con.gz (30.24 MB) |
Hordeum vulgare | Not Available | Not Available | hvu.con.gz (541.50 MB) |
Musa acuminata | Not Available | Not Available | mac.con.gz (115.88 MB) |
Oryza sativa ssp. indica | Not Available | Not Available | osaindica.con.gz (121.43 MB) |
Oryza sativa ssp. japonica | Not Available | Not Available | osa.con.gz (110.62 MB) |
Ostreococcus lucimarinus | Not Available | Not Available | olu.con.gz (3.80 MB) |
Physcomitrella patens | Not Available | Not Available | ppa.con.gz (131.09 MB) |
Populus trichocarpa | Not Available | Not Available | ptr.con.gz (119.95 MB) |
Setaria italica | Not Available | Not Available | sit.con.gz (116.29 MB) |
Solanum lycopersicum | Not Available | Not Available | sly.con.gz (212.00 MB) |
Sorghum bicolor | Not Available | Not Available | sbi.con.gz (205.94 MB) |
Vitis vinifera | Not Available | Not Available | vvi.con.gz (135.50 MB) |
Zea mays | Not Available | Not Available | zma.con.gz (606.92 MB) |
All species | Not Available | Not Available | Not Available |
Species | Anchorpoints |
---|---|
Arabidopsis thaliana | anchorpoints.ath.csv.gz (49.12 KB) |
Brachypodium distachyon | anchorpoints.bdi.csv.gz (48.18 KB) |
Carica papaya | anchorpoints.cpa.csv.gz (6.29 KB) |
Chlamydomonas reinhardtii | anchorpoints.cre.csv.gz (489.00 B) |
Hordeum vulgare | anchorpoints.hvu.csv.gz (391.00 B) |
Musa acuminata | anchorpoints.mac.csv.gz (115.77 KB) |
Oryza sativa ssp. indica | anchorpoints.osaindica.csv.gz (68.32 KB) |
Oryza sativa ssp. japonica | anchorpoints.osa.csv.gz (69.84 KB) |
Ostreococcus lucimarinus | anchorpoints.olu.csv.gz (2.52 KB) |
Physcomitrella patens | anchorpoints.ppa.csv.gz (14.42 KB) |
Populus trichocarpa | anchorpoints.ptr.csv.gz (190.46 KB) |
Setaria italica | anchorpoints.sit.csv.gz (61.25 KB) |
Solanum lycopersicum | anchorpoints.sly.csv.gz (49.85 KB) |
Sorghum bicolor | anchorpoints.sbi.csv.gz (58.60 KB) |
Vitis vinifera | anchorpoints.vvi.csv.gz (26.07 KB) |
Zea mays | anchorpoints.zma.csv.gz (138.32 KB) |
All species | anchorpoints.csv.gz (980.15 KB) |
Data type | Gene families (HOM) | Sub families (ORTH) |
---|---|---|
genefamily_data | genefamily_data.hom.csv.gz (2.84 MB) | genefamily_data.orth.csv.gz (3.54 MB) |
genefamily_enrichment | genefamily_enrichment.hom.csv.gz (2.69 MB) | genefamily_enrichment.orth.csv.gz (4.89 MB) |
Orthology type | Description | Data file |
---|---|---|
BHIF | Orthologs detected through best-BLAST hits | integrative_orthology.BHIF.csv.gz (57.95 MB) |
ORTHO | Orthologs detected through OrthoMCL clustering | integrative_orthology.ORTHO.csv.gz (9.39 MB) |
TROG | Orthologs detected through phylogenetic trees | integrative_orthology.TROG.csv.gz (49.32 MB) |
anchor_point | Orthologs detected through colinearity information | integrative_orthology.anchor_point.csv.gz (9.50 MB) |