Download section

All downloads are also available from ftp-directory : ftp directory

File Description
PLAZA_PGE_poster.pptxPoster for PLAZA 2.5
PLAZA_flyer_2.5.pdfFlyer presenting the capabilities of the PLAZA 2.5 platform.
PLAZA_flyer_3.0.pdfFlyer presenting the capabilities of the PLAZA 3.0 platform.
PLAZA_presentation.pptPresentation on the standard capabilities of PLAZA, including several frequently asked questions on topics concerning wetlab research. Presented at PSB Weekly Science Meeting 2010-01-22.

Species Annotation (CSV) Annotation (GFF)
Arabidopsis thaliana Not Available Not Available
Brachypodium distachyon Not Available Not Available
Carica papaya Not Available Not Available
Chlamydomonas reinhardtii Not Available Not Available
Hordeum vulgare Not Available Not Available
Musa acuminata Not Available Not Available
Oryza sativa ssp. indica Not Available Not Available
Oryza sativa ssp. japonica Not Available Not Available
Ostreococcus lucimarinus Not Available Not Available
Physcomitrella patens Not Available Not Available
Populus trichocarpa Not Available Not Available
Setaria italica Not Available Not Available
Solanum lycopersicum Not Available Not Available
Sorghum bicolor Not Available Not Available
Vitis vinifera Not Available Not Available
Zea mays Not Available Not Available
All species Not Available Not Available


Species Gene Ontology Interpro MapMan
Arabidopsis thaliana go.ath.csv.gz (28.57 MB) interpro.ath.csv.gz (1.87 MB) mapman.ath.csv.gz (247.12 KB)
Brachypodium distachyon go.bdi.csv.gz (11.21 MB) interpro.bdi.csv.gz (1.83 MB) mapman.bdi.csv.gz (194.55 KB)
Carica papaya go.cpa.csv.gz (11.84 MB) interpro.cpa.csv.gz (1.40 MB) mapman.cpa.csv.gz (19.02 KB)
Chlamydomonas reinhardtii go.cre.csv.gz (5.77 MB) interpro.cre.csv.gz (944.29 KB) mapman.cre.csv.gz (109.03 KB)
Hordeum vulgare go.hvu.csv.gz (11.19 MB) interpro.hvu.csv.gz (1.68 MB) mapman.hvu.csv.gz (277.00 B)
Musa acuminata go.mac.csv.gz (15.12 MB) interpro.mac.csv.gz (2.32 MB) mapman.mac.csv.gz (268.00 B)
Oryza sativa ssp. indica go.osaindica.csv.gz (15.21 MB) interpro.osaindica.csv.gz (2.57 MB) mapman.osaindica.csv.gz (293.00 B)
Oryza sativa ssp. japonica go.osa.csv.gz (16.16 MB) interpro.osa.csv.gz (2.70 MB) mapman.osa.csv.gz (334.69 KB)
Ostreococcus lucimarinus go.olu.csv.gz (4.31 MB) interpro.olu.csv.gz (528.42 KB) mapman.olu.csv.gz (289.00 B)
Physcomitrella patens go.ppa.csv.gz (12.52 MB) interpro.ppa.csv.gz (1.58 MB) mapman.ppa.csv.gz (220.34 KB)
Populus trichocarpa go.ptr.csv.gz (19.26 MB) interpro.ptr.csv.gz (2.66 MB) mapman.ptr.csv.gz (303.86 KB)
Setaria italica go.sit.csv.gz (14.65 MB) interpro.sit.csv.gz (2.03 MB) mapman.sit.csv.gz (259.35 KB)
Solanum lycopersicum go.sly.csv.gz (13.07 MB) interpro.sly.csv.gz (1.98 MB) mapman.sly.csv.gz (255.16 KB)
Sorghum bicolor go.sbi.csv.gz (12.29 MB) interpro.sbi.csv.gz (1.88 MB) mapman.sbi.csv.gz (270.00 B)
Vitis vinifera go.vvi.csv.gz (10.77 MB) interpro.vvi.csv.gz (1.70 MB) mapman.vvi.csv.gz (196.63 KB)
Zea mays go.zma.csv.gz (14.32 MB) interpro.zma.csv.gz (2.21 MB) mapman.zma.csv.gz (343.16 KB)
All species Not available interpro.csv.gz (29.81 MB) mapman.csv.gz (2.42 MB)

Species CDS files Protein files Genome files
Arabidopsis thaliana Not Available Not Available ath.con.gz (34.28 MB)
Brachypodium distachyon Not Available Not Available bdi.con.gz (76.24 MB)
Carica papaya Not Available Not Available cpa.con.gz (80.80 MB)
Chlamydomonas reinhardtii Not Available Not Available cre.con.gz (30.24 MB)
Hordeum vulgare Not Available Not Available hvu.con.gz (541.50 MB)
Musa acuminata Not Available Not Available mac.con.gz (115.88 MB)
Oryza sativa ssp. indica Not Available Not Available osaindica.con.gz (121.43 MB)
Oryza sativa ssp. japonica Not Available Not Available osa.con.gz (110.62 MB)
Ostreococcus lucimarinus Not Available Not Available olu.con.gz (3.80 MB)
Physcomitrella patens Not Available Not Available ppa.con.gz (131.09 MB)
Populus trichocarpa Not Available Not Available ptr.con.gz (119.95 MB)
Setaria italica Not Available Not Available sit.con.gz (116.29 MB)
Solanum lycopersicum Not Available Not Available sly.con.gz (212.00 MB)
Sorghum bicolor Not Available Not Available sbi.con.gz (205.94 MB)
Vitis vinifera Not Available Not Available vvi.con.gz (135.50 MB)
Zea mays Not Available Not Available zma.con.gz (606.92 MB)
All species Not Available Not Available Not Available


Data type Gene families (HOM) Sub families (ORTH)
genefamily_datagenefamily_data.hom.csv.gz (2.84 MB)genefamily_data.orth.csv.gz (3.54 MB)
genefamily_enrichmentgenefamily_enrichment.hom.csv.gz (2.69 MB)genefamily_enrichment.orth.csv.gz (4.89 MB)

Orthology type Description Data file
BHIF Orthologs detected through best-BLAST hits integrative_orthology.BHIF.csv.gz (57.95 MB)
ORTHO Orthologs detected through OrthoMCL clustering integrative_orthology.ORTHO.csv.gz (9.39 MB)
TROG Orthologs detected through phylogenetic trees integrative_orthology.TROG.csv.gz (49.32 MB)
anchor_point Orthologs detected through colinearity information integrative_orthology.anchor_point.csv.gz (9.50 MB)