Populus trichocarpa

The black cottonwood is a tree common to western parts of North America. Although closely related species are common in other parts of the world. This species has a couple features making it an interesting model organism for biology. The genome size is only 4x that of Arabidopsis. Techniques for high-throughput transformation are available, that in combination with the genome sequence become valuable tools to create transgenic plants. As the cottonwood can grow on marginal lands, where it is commonly used as windbreaks, it can also be used as a crop for second generation bio-fuels.

Publication:
The genome of black cottonwood, Populus trichocarpa.

Info and Links

Common name Populus trichocarpa
Cultivar/subspecies Not available
PLAZA identifier ptr
Source JGI v4.1
NCBI taxonomy 3694
Mitochondrion Not available
Chloroplast Not available

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Page 1 of 1735, showing 20 records out of 34699 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
Potri.001G000400Potri.001G000400.51393516452-Chr01codingHOM05M003891ORTHO05M004640
Potri.001G000450Potri.001G000450.11468314997-Chr01codingHOM05M004128ORTHO05M004948
Potri.001G000500Potri.001G000500.14119643080-Chr01codingHOM05M000318ORTHO05M003133
Potri.001G000600Potri.001G000600.15073452527+Chr01codingHOM05M000318ORTHO05M003133
Potri.001G000700Potri.001G000700.26090664830-Chr01codingHOM05M004020ORTHO05M004920
Potri.001G000800Potri.001G000800.56621670183-Chr01codingHOM05M000029ORTHO05M003033
Potri.001G000900Potri.001G000900.28854091842-Chr01codingHOM05M002944ORTHO05M003387
Potri.001G001000Potri.001G001000.19346594283+Chr01codingHOM05M008144ORTHO05M010189
Potri.001G001100Potri.001G001100.19851299495+Chr01codingHOM05M000093ORTHO05M000050
Potri.001G001201Potri.001G001201.2101878103624+Chr01codingHOM05M003171ORTHO05M003850
Potri.001G001250Potri.001G001250.1104243105430+Chr01codingHOM05M003171ORTHO05M003850
Potri.001G001300Potri.001G001300.1106877109252-Chr01codingHOM05M007033ORTHO05M003674
Potri.001G001400Potri.001G001400.2109788111044+Chr01codingHOM05M004599ORTHO05M005542
Potri.001G001500Potri.001G001500.4115785116933+Chr01codingHOM05M000102ORTHO05M000046
Potri.001G001600Potri.001G001600.1118561122140-Chr01codingHOM05M000305ORTHO05M001448
Potri.001G001700Potri.001G001700.2125402129098-Chr01codingHOM05M002503ORTHO05M002680
Potri.001G002000Potri.001G002000.1133942137280-Chr01codingHOM05M000402ORTHO05M000301
Potri.001G002200Potri.001G002200.2138679142684-Chr01codingHOM05M000024ORTHO05M000011
Potri.001G002300Potri.001G002300.3147963151077+Chr01codingHOM05M000016ORTHO05M000014
Potri.001G002350Potri.001G002350.1151546151803+Chr01codingOrphan GeneOrphan Gene