Theobroma cacao

Theobroma cacao, the cacao variety endemic to South American rainforest, has been cultivated over 3,000 years resulting in the highly domesticated Criollo Cocoa we know today. This genome has been sequence to determine the genes involved in the compounds determining the unique flavor of chocolate. While this cultivar produces high quality fine chocolate, it is highly susceptible to diseases and has a low yield. Therefore over 95% of the world chocolates production uses more vigorous hybrids. With access to the full genome, the goal is to breed improved varieties, to keep production up with the increasing demand for fine-grade chocolate.

Publication:
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.

Disclaimer:
Bulk download disabled on demand of data provider, until publication

Info and Links

Common name Theobroma cacao
Cultivar/subspecies Not available
PLAZA identifier tca
Source V2.1
NCBI taxonomy 3641
Mitochondrion Not available
Chloroplast Not available

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Page 1 of 1369, showing 20 records out of 27379 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
Thecc.01G000100Thecc.01G000100.153186554+Chromosome_1codingHOM05D000024ORTHO05D000007
Thecc.01G000200Thecc.01G000200.11270814004+Chromosome_1codingHOM05D001339ORTHO05D002998
Thecc.01G000300Thecc.01G000300.21606419462+Chromosome_1codingHOM05D002832ORTHO05D007530
Thecc.01G000500Thecc.01G000500.22249230332+Chromosome_1codingHOM05D000141ORTHO05D004489
Thecc.01G000600Thecc.01G000600.13204735344+Chromosome_1codingHOM05D000849ORTHO05D006066
Thecc.01G000700Thecc.01G000700.13674738025+Chromosome_1codingHOM05D004251ORTHO05D005010
Thecc.01G000800Thecc.01G000800.24123942913-Chromosome_1codingHOM05D000849ORTHO05D006066
Thecc.01G000900Thecc.01G000900.24360547774-Chromosome_1codingHOM05D000015ORTHO05D003512
Thecc.01G001000Thecc.01G001000.16205362996+Chromosome_1codingHOM05D008614ORTHO05D010420
Thecc.01G001100Thecc.01G001100.26488867887+Chromosome_1codingHOM05D002867ORTHO05D003336
Thecc.01G001200Thecc.01G001200.16973886549-Chromosome_1codingHOM05D000534ORTHO05D000389
Thecc.01G001300Thecc.01G001300.17371074638+Chromosome_1codingHOM05D009258ORTHO05D009583
Thecc.01G001400Thecc.01G001400.18509385874+Chromosome_1codingOrphan GeneOrphan Gene
Thecc.01G001500Thecc.01G001500.28987395230+Chromosome_1codingHOM05D001957ORTHO05D002015
Thecc.01G001600Thecc.01G001600.19592899409-Chromosome_1codingHOM05D000115ORTHO05D003511
Thecc.01G001700Thecc.01G001700.19948199633+Chromosome_1codingOrphan GeneOrphan Gene
Thecc.01G001800Thecc.01G001800.1101653102093+Chromosome_1codingHOM05D007735ORTHO05D009638
Thecc.01G001900Thecc.01G001900.1103814104900+Chromosome_1codingHOM05D001499ORTHO05D001560
Thecc.01G002000Thecc.01G002000.1108591111301-Chromosome_1codingHOM05D000935ORTHO05D001483
Thecc.01G002100Thecc.01G002100.1113780118894+Chromosome_1codingHOM05D005976ORTHO05D007149