PLAZA 4.0 Monocots gene overview : Zosma122g00440

Gene: Zosma122g00440 (Zostera marina)

Overview

Gene Identifier: Zosma122g00440
Transcript Identifier: Zosma122g00440.1
Gene Type: Coding gene
Location: scaffold_122 : 232033-233085 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: myb domain protein 103

Identifiers

Type	Value
id	Zosma122g00440.v2.2
pacid	33174780
tid	Zosma122g00440.1.v2.2
tid	Zosma122g00440.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0048658	IEA	PLAZA Integrative Orthology	anther wall tapetum development	AT3G28470
GO:0055046	IEA	PLAZA Integrative Orthology	microgametogenesis	AT3G28470
GO:0052545	IEA	PLAZA Integrative Orthology	callose localization	AT3G28470

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G28470

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.