Gene: Zosma109g00390 (Zostera marina)

Overview top

Gene Identifier
Zosma109g00390
Transcript Identifier
Zosma109g00390.1
Gene Type
Coding gene
Location
scaffold_109 : 389364-403236 : negative

Family

Gene family
HOM04M000371
(307 genes in 28 species)
specific family
Subfamily
ORTHO04M000440
(210 genes in 28 species)
specific family

Descriptions

Description
dicer-like 1

Identifiers

Type Value
idZosma109g00390.v2.2
pacid33179746
tidZosma109g00390.1.v2.2
tidZosma109g00390.1

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396 IEAInterProRNA processing
GO:0010267 IEAPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G01040
GO:0010228 IEAPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G01040
GO:0035279 IEAPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G01040
GO:2000034 IEAPLAZA Integrative Orthologyregulation of seed maturationAT1G01040
GO:0010599 IEAPLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interferenceAT1G01040
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT1G01040
GO:0009616 IEAPLAZA Integrative Orthologyvirus induced gene silencingAT1G01040
GO:0048317 IEAPLAZA Integrative Orthologyseed morphogenesisAT1G01040
GO:0000911 IEAPLAZA Integrative Orthologycytokinesis by cell plate formationAT1G01040
GO:0009880 IEAPLAZA Integrative Orthologyembryonic pattern specificationAT1G01040
GO:0035196 IEAPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT1G01040
GO:0031053 IEAPLAZA Integrative Orthologyprimary miRNA processingAT1G01040
GO:0010098 IEAPLAZA Integrative Orthologysuspensor developmentAT1G01040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004525 IEAInterProribonuclease III activity
GO:0003677 IEAInterProDNA binding
GO:0005524 IEAInterProATP binding
GO:0016787 IEAInterProhydrolase activity
GO:0016891 IEAInterProendoribonuclease activity, producing 5'-phosphomonoesters
GO:0005515 IEAInterProprotein binding
GO:0003725 IEAPLAZA Integrative Orthologydouble-stranded RNA bindingAT1G01040

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0010445 IEAPLAZA Integrative Orthologynuclear dicing bodyAT1G01040
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G01040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000999Ribonuclease III domain
IPR014720Double-stranded RNA-binding domain
IPR006935Helicase/UvrB, N-terminal
IPR001650Helicase, C-terminal
IPR005034Dicer dimerisation domain
IPR003100PAZ domain
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
16.10.2.1.1.RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.endoribonuclease component DCL1
No SignalP domains detected for this gene.