PLAZA 4.0 Monocots gene overview : Zm00001d028842

Gene: Zm00001d028842 (Zea mays)

Overview

Gene Identifier: Zm00001d028842
Transcript Identifier: Zm00001d028842_T001
Gene Type: Coding gene
Location: 1 : 48424868-48429801 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: Myb-like transcription factor
pericarp color2

Identifiers

Type	Value
pid	Zm00001d028842_P001
tid	Zm00001d028842_T001
V3_identifier	GRMZM2G057027

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT2G47460
GO:0010224	IEA	PLAZA Integrative Orthology	response to UV-B	AT3G62610
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT2G47460
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT3G62610
GO:0009813	IEA	PLAZA Integrative Orthology	flavonoid biosynthetic process	AT2G47460
GO:0048640	IEA	PLAZA Integrative Orthology	negative regulation of developmental growth	AT3G62610
GO:0008285	IEA	PLAZA Integrative Orthology	negative regulation of cell proliferation	AT3G62610
GO:1900386	IEA	PLAZA Integrative Orthology	positive regulation of flavonol biosynthetic process	AT3G62610
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT2G47460
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT2G47460
GO:0051555	IEA	PLAZA Integrative Orthology	flavonol biosynthetic process	AT3G62610

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT2G47460

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR010588	Myb-related protein P, C-terminal
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.