PLAZA 4.0 Monocots gene overview : Zm00001d028200

Gene: Zm00001d028200 (Zea mays)

Overview

Gene Identifier: Zm00001d028200
Transcript Identifier: Zm00001d028200_T001
Gene Type: Coding gene
Location: 1 : 26010781-26012220 : positive

Family

Gene family: HOM04M000041
(1489 genes in 27 species)
specific family
Subfamily: ORTHO04M001629
(90 genes in 27 species)
specific family

Descriptions

Description: Protein trichome birefringence-like 16

Identifiers

Type	Value
pid	Zm00001d028200_P001
tid	Zm00001d028200_T001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR026057	PC-Esterase
IPR025846	PMR5 N-terminal domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.