PLAZA 4.0 Monocots gene overview : Zm00001d011645

Gene: Zm00001d011645 (Zea mays)

Overview

Gene Identifier: Zm00001d011645
Transcript Identifier: Zm00001d011645_T001
Gene Type: Coding gene
Location: 8 : 157426995-157428942 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: Putative MYB DNA-binding domain superfamily protein

Identifiers

Type	Value
pid	Zm00001d011645_P001
tid	Zm00001d011645_T001
V3_identifier	GRMZM2G395672

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010224	IEA	PLAZA Integrative Orthology	response to UV-B	AT1G56650
GO:0010205	IEA	PLAZA Integrative Orthology	photoinhibition	AT1G56650
GO:0031540	IEA	PLAZA Integrative Orthology	regulation of anthocyanin biosynthetic process	AT1G66370
GO:0031542	IEA	PLAZA Integrative Orthology	positive regulation of anthocyanin biosynthetic process	AT1G56650
GO:0019430	IEA	PLAZA Integrative Orthology	removal of superoxide radicals	AT1G56650
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT1G56650
GO:0009718	IEA	PLAZA Integrative Orthology	anthocyanin-containing compound biosynthetic process	AT1G56650
GO:0009745	IEA	PLAZA Integrative Orthology	sucrose mediated signaling	AT1G56650
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT1G56650
GO:0009867	IEA	PLAZA Integrative Orthology	jasmonic acid mediated signaling pathway	AT1G56650
GO:0006355	IEA	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT1G66370
GO:0080167	IEA	PLAZA Integrative Orthology	response to karrikin	AT1G66390
GO:0016036	IEA	PLAZA Integrative Orthology	cellular response to phosphate starvation	AT1G56650
GO:0050832	IEA	PLAZA Integrative Orthology	defense response to fungus	AT1G56650
GO:0046283	IEA	PLAZA Integrative Orthology	anthocyanin-containing compound metabolic process	AT1G56650
GO:0009409	IEA	PLAZA Integrative Orthology	response to cold	AT1G56650
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT1G56650
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT1G66370
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT1G56650

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT1G66390
GO:0008195	IEA	PLAZA Integrative Orthology	phosphatidate phosphatase activity	AT1G56650
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G56650
GO:0003993	IEA	PLAZA Integrative Orthology	acid phosphatase activity	AT1G56650

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0010287	IEA	PLAZA Integrative Orthology	plastoglobule	AT1G56650
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G56650
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G56650
GO:0009505	IEA	PLAZA Integrative Orthology	plant-type cell wall	AT1G56650
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT1G56650
GO:0010319	IEA	PLAZA Integrative Orthology	stromule	AT1G56650
GO:0031977	IEA	PLAZA Integrative Orthology	thylakoid lumen	AT1G56650
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT1G56650
GO:0005887	IEA	PLAZA Integrative Orthology	integral component of plasma membrane	AT1G56650
GO:0009579	IEA	PLAZA Integrative Orthology	thylakoid	AT1G56650
GO:0009535	IEA	PLAZA Integrative Orthology	chloroplast thylakoid membrane	AT1G56650
GO:0009534	IEA	PLAZA Integrative Orthology	chloroplast thylakoid	AT1G56650
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT1G56650

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.