PLAZA 4.0 Monocots gene overview : Zm00001d000381

Gene: Zm00001d000381 (Zea mays)

Overview

Gene Identifier: Zm00001d000381
Transcript Identifier: Zm00001d000381_T001
Gene Type: Coding gene
Location: B73V4_ctg24 : 22114-27070 : negative

Family

Gene family: HOM04M000074
(1104 genes in 29 species)
specific family
Subfamily: ORTHO04M000989
(124 genes in 28 species)
specific family

Descriptions

Description: Putative ARM repeat-containing protein containing family protein

Identifiers

Type	Value
pid	Zm00001d000381_P001
tid	Zm00001d000381_T001
V3_identifier	GRMZM2G471733

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016567	IEA	InterPro	protein ubiquitination
GO:0051865	IEA	PLAZA Integrative Orthology	protein autoubiquitination	AT1G23030
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT1G23030
GO:2000022	IEA	PLAZA Integrative Orthology	regulation of jasmonic acid mediated signaling pathway	AT1G71020
GO:0031648	IEA	PLAZA Integrative Orthology	protein destabilization	AT1G71020

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004842	IEA	InterPro	ubiquitin-protein transferase activity
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	InterPro	binding
GO:0043621	IEA	PLAZA Integrative Orthology	protein self-association	AT1G71020

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G71020

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011989	Armadillo-like helical
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR003613	U box domain
IPR000225	Armadillo
IPR016024	Armadillo-type fold

Mapman id	Description
19.2.2.1.5.2.1	.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.E3 ubiquitin ligase (PUB)

No SignalP domains detected for this gene.