PLAZA 4.0 Monocots gene overview : TAE38557G001

Gene: TAE38557G001 (Triticum aestivum)

Overview

Gene Identifier: TAE38557G001
Transcript Identifier: TAE38557G001.01
Gene Type: Coding gene
Location: TGACv1_scaffold_249058_3DL : 151758-152647 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: Transcription repressor MYB5

Identifiers

Type	Value
id	TRIAE_CS42_3DL_TGACv1_249058_AA0836420
tid	TRIAE_CS42_3DL_TGACv1_249058_AA0836420.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0032880	IEA	PLAZA Integrative Orthology	regulation of protein localization	AT3G27920
GO:0010090	IEA	PLAZA Integrative Orthology	trichome morphogenesis	AT3G13540
GO:0009740	IEA	PLAZA Integrative Orthology	gibberellic acid mediated signaling pathway	AT3G27920
GO:0048629	IEA	PLAZA Integrative Orthology	trichome patterning	AT3G27920
GO:0009867	IEA	PLAZA Integrative Orthology	jasmonic acid mediated signaling pathway	AT3G27920
GO:0048354	IEA	PLAZA Integrative Orthology	mucilage biosynthetic process involved in seed coat development	AT3G13540
GO:0010468	IEA	PLAZA Integrative Orthology	regulation of gene expression	AT3G13540
GO:0010214	IEA	PLAZA Integrative Orthology	seed coat development	AT3G13540
GO:0001708	IEA	PLAZA Integrative Orthology	cell fate specification	AT3G27920
GO:2000039	IEA	PLAZA Integrative Orthology	regulation of trichome morphogenesis	AT3G27920
GO:0010026	IEA	PLAZA Integrative Orthology	trichome differentiation	AT3G27920

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT3G27920
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G27920

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G27920

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.