PLAZA 4.0 Monocots gene overview : TAE00020G001

Gene: TAE00020G001 (Triticum aestivum)

Overview

Gene Identifier: TAE00020G001
Transcript Identifier: TAE00020G001.01
Gene Type: Coding gene
Location: TGACv1_scaffold_224506_3B : 30922-33414 : positive

Family

Gene family: HOM04M000001
(8521 genes in 28 species)
specific family
Subfamily: ORTHO04M000001
(5133 genes in 26 species)
specific family

Descriptions

Description: Pentatricopeptide repeat-containing protein At5g16860

Identifiers

Type	Value
id	TRIAE_CS42_3B_TGACv1_224506_AA0797450
tid	TRIAE_CS42_3B_TGACv1_224506_AA0797450.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR002885	Pentatricopeptide repeat
IPR032867	DYW domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.