Gene: Spipo12G0062200 (Spirodela polyrhiza)

Overview top

Gene Identifier
Spipo12G0062200
Transcript Identifier
Spipo12G0062200
Gene Type
Coding gene
Location
pseudo12 : 4383858-4385255 : negative

Family

Gene family
HOM04M000219
(435 genes in 27 species)
specific family
Subfamily
ORTHO04M009080
(27 genes in 22 species)
specific family

Descriptions

Description
Ubiquitin carboxyl-terminal hydrolase family protein

Identifiers

Type Value
idSpipo12G0062200.v2
pacid31502943
tidSpipo12G0062200.v2.290

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010495 IEAPLAZA Tree-based Orthologylong-distance posttranscriptional gene silencingAT4G33495
GO:0008285 IEAPLAZA Tree-based Orthologynegative regulation of cell proliferationAT4G33495
GO:0006979 IEAPLAZA Tree-based Orthologyresponse to oxidative stressAT4G08940
GO:0000373 IEAPLAZA Integrative OrthologyGroup II intron splicingAT2G39120
GO:0031047 IEAPLAZA Tree-based Orthologygene silencing by RNAAT4G33495
GO:0017004 IEAPLAZA Integrative Orthologycytochrome complex assemblyAT2G39120
GO:0030422 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in RNA interferenceAT4G33495
GO:0010102 IEAPLAZA Tree-based Orthologylateral root morphogenesisAT4G33495

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723 IEAPLAZA Integrative OrthologyRNA bindingAT2G39120

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000418 IEAPLAZA Tree-based OrthologyDNA-directed RNA polymerase IV complexAT4G33495
GO:0005654 IEAPLAZA Tree-based OrthologynucleoplasmAT4G33495
GO:0005634 IEAPLAZA Tree-based OrthologynucleusAT4G33495
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT2G39120

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR021099Plant organelle RNA recognition domain

Mapman id Description
16.12.2.2.1.7.RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.splicing factor (WTF9)
No SignalP domains detected for this gene.