Gene: Solyc12g100330.1 (Solanum lycopersicum)

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Gene Identifier
Solyc12g100330.1
Transcript Identifier
Solyc12g100330.1.1
Gene Type
Coding gene
Location
SL2.50ch12 : 67089829-67096240 : positive

Family

Gene family
HOM04M001881
(82 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Cytosine-specific methyltransferase (AHRD V1 **** B9GLJ3_POPTR); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase

Identifiers

Type Value
idSolyc12g100330.1.ITAG2.4
pacid36148980
tidSolyc12g100330.1.1.ITAG2.4
tidSolyc12g100330.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010154 IDAGene Ontologyfruit development1
GO:0009836 IDAGene Ontologyfruit ripening, climacteric1
GO:0051567 IEAPLAZA Integrative Orthologyhistone H3-K9 methylationAT1G69770
GO:0010069 IEAPLAZA Integrative Orthologyzygote asymmetric cytokinesis in embryo sacAT1G69770
GO:0010425 IEAPLAZA Integrative OrthologyDNA methylation on cytosine within a CNG sequenceAT1G69770
GO:0006342 IEAPLAZA Integrative Orthologychromatin silencingAT1G69770
GO:0006306 IEAPLAZA Integrative OrthologyDNA methylationAT1G69770
GO:0045814 IEAPLAZA Integrative Orthologynegative regulation of gene expression, epigeneticAT1G69770
GO:0009294 IEAPLAZA Integrative OrthologyDNA mediated transformationAT1G80740

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003886 IDAGene OntologyDNA (cytosine-5-)-methyltransferase activity1
GO:0003682 IEAInterProchromatin binding
GO:0008168 IEAInterPromethyltransferase activity

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR029063S-adenosyl-L-methionine-dependent methyltransferase
IPR023780Chromo domain
IPR001025Bromo adjacent homology (BAH) domain
IPR001525C-5 cytosine methyltransferase
IPR018117DNA methylase, C-5 cytosine-specific, active site
IPR023779Chromo domain, conserved site
IPR000953Chromo/chromo shadow domain
IPR016197Chromo domain-like

Mapman id Description
12.5.2.3.Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA chromomethylase (CMT)
No SignalP domains detected for this gene.