Gene: Solyc12g009560.1 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc12g009560.1
Transcript Identifier
Solyc12g009560.1.1
Gene Type
Coding gene
Location
SL2.50ch12 : 2815885-2818657 : positive

Family

Gene family
HOM04M001877
(82 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
F-box/LRR-repeat protein (AHRD V1 *-*- C0S347_PARBP); contains Interpro domain(s) IPR001810 Cyclin-like F-box

Identifiers

Type Value
idSolyc12g009560.1.ITAG2.4
pacid36148811
tidSolyc12g009560.1.1.ITAG2.4
tidSolyc12g009560.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010260 IGIGene Ontologyanimal organ senescence1
GO:0009733 IEPGene Ontologyresponse to auxin1
GO:0009723 IEPGene Ontologyresponse to ethylene1
GO:0006511 IEAPLAZA Tree-based Orthologyubiquitin-dependent protein catabolic processAT5G25350
GO:0010105 IEAPLAZA Tree-based Orthologynegative regulation of ethylene-activated signaling pathwayAT5G25350

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0019005 IEAPLAZA Tree-based OrthologySCF ubiquitin ligase complexAT5G25350
GO:0005634 IEAPLAZA Tree-based OrthologynucleusAT5G25350

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR032675Leucine-rich repeat domain, L domain-like
IPR001810F-box domain
IPR001611Leucine-rich repeat
IPR006553Leucine-rich repeat, cysteine-containing subtype

Mapman id Description
11.5.2.6.Phytohormone action.ethylene.perception and signal transduction.signal transducer (EBF)
19.2.2.8.1.4.2.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.F-BOX substrate adaptor components.component EBF
No SignalP domains detected for this gene.