Gene: Solyc11g030600.2 (Solanum lycopersicum)

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Gene Identifier
Solyc11g030600.2
Transcript Identifier
Solyc11g030600.2.1
Gene Type
Coding gene
Location
SL2.50ch11 : 22206317-22222608 : negative

Family

Gene family
HOM04M000881
(153 genes in 28 species)
specific family

Descriptions

Description
DNA (Cytosine-5)-methyltransferase (AHRD V1 **** O49889_SOLLC); contains Interpro domain(s) IPR017198 DNA (cytosine-5)-methyltransferase 1

Identifiers

Type Value
idSolyc11g030600.2.ITAG2.4
pacid36151937
tidSolyc11g030600.2.1.ITAG2.4
tidSolyc11g030600.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009835 IDAGene Ontologyfruit ripening1
GO:0009836 IDAGene Ontologyfruit ripening, climacteric1
GO:0090116 IEAInterProC-5 methylation of cytosine
GO:0010069 IEAPLAZA Integrative Orthologyzygote asymmetric cytokinesis in embryo sacAT5G49160
GO:0010216 IEAPLAZA Integrative Orthologymaintenance of DNA methylationAT5G49160
GO:0010206 IEAPLAZA Integrative Orthologyphotosystem II repairAT5G49160
GO:0015979 IEAPLAZA Integrative OrthologyphotosynthesisAT5G49160
GO:0010424 IEAPLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequenceAT5G49160
GO:0010207 IEAPLAZA Integrative Orthologyphotosystem II assemblyAT5G49160
GO:0006349 IEAPLAZA Integrative Orthologyregulation of gene expression by genetic imprintingAT5G49160
GO:0009910 IEAPLAZA Integrative Orthologynegative regulation of flower developmentAT5G49160
GO:0009416 IEAPLAZA Integrative Orthologyresponse to light stimulusAT5G49160
GO:0009644 IEAPLAZA Integrative Orthologyresponse to high light intensityAT5G49160
GO:0009611 IEAPLAZA Integrative Orthologyresponse to woundingAT5G49160
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT4G13610
GO:0009294 IEAPLAZA Integrative OrthologyDNA mediated transformationAT5G49160

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003886 IDA, IEAGene OntologyDNA (cytosine-5-)-methyltransferase activity1
GO:0003682 IEAInterProchromatin binding
GO:0008168 IEAInterPromethyltransferase activity
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G49160

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0035448 IEAPLAZA Integrative Orthologyextrinsic component of thylakoid membraneAT5G49160
GO:0031969 IEAPLAZA Integrative Orthologychloroplast membraneAT5G49160
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT5G49160
GO:0009579 IEAPLAZA Integrative OrthologythylakoidAT5G49160
GO:0009535 IEAPLAZA Integrative Orthologychloroplast thylakoid membraneAT5G49160
GO:0009575 IEAPLAZA Integrative Orthologychromoplast stromaAT5G49160
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT5G49160
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidAT5G49160
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaAT5G49160

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001025Bromo adjacent homology (BAH) domain
IPR022702DNA (cytosine-5)-methyltransferase 1, replication foci domain
IPR029063S-adenosyl-L-methionine-dependent methyltransferase
IPR017198DNA (cytosine-5)-methyltransferase 1-like
IPR001525C-5 cytosine methyltransferase
IPR018117DNA methylase, C-5 cytosine-specific, active site
IPR031303DNA methylase, C-5 cytosine-specific, conserved site

Mapman id Description
12.5.2.2.Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA methyltransferase (MET)
No SignalP domains detected for this gene.