Gene: Solyc11g011560.1 (Solanum lycopersicum)

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Gene Identifier
Solyc11g011560.1
Transcript Identifier
Solyc11g011560.1.1
Gene Type
Coding gene
Location
SL2.50ch11 : 4628796-4631184 : positive

Family

Gene family
HOM04M001032
(135 genes in 29 species)
specific family

Descriptions

Description
PHD finger family protein (AHRD V1 **-- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type

Identifiers

Type Value
idSolyc11g011560.1.ITAG2.4
pacid36152454
tidSolyc11g011560.1.1.ITAG2.4
tidSolyc11g011560.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0051321 IEAPLAZA Integrative Orthologymeiotic cell cycleAT1G66170
GO:0048235 IEAPLAZA Integrative Orthologypollen sperm cell differentiationAT1G66170
GO:0000212 IEAPLAZA Integrative Orthologymeiotic spindle organizationAT1G66170
GO:0006355 IEAPLAZA Integrative Orthologyregulation of transcription, DNA-templatedAT1G66170
GO:0010032 IEAPLAZA Integrative Orthologymeiotic chromosome condensationAT1G66170
GO:0007060 IEAPLAZA Integrative Orthologymale meiosis chromosome segregationAT1G66170

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0033613 IEAPLAZA Integrative Orthologyactivating transcription factor bindingAT1G66170
GO:0042393 IEAPLAZA Integrative Orthologyhistone bindingAT1G66170
GO:0003677 IEAPLAZA Integrative OrthologyDNA bindingAT1G66170
GO:1990188 IEAPLAZA Integrative Orthologyeuchromatin bindingAT1G66170
GO:0000975 IEAPLAZA Integrative Orthologyregulatory region DNA bindingAT1G66170
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT1G66170

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005719 IEAPLAZA Integrative Orthologynuclear euchromatinAT1G66170
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G66170

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
13.3.6.1.3.Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.regulatory protein (MMD1/DUET)
15.5.30.RNA biosynthesis.transcriptional regulation.transcription factor (PHD)
No SignalP domains detected for this gene.