Gene: Solyc11g007580.1 (Solanum lycopersicum)

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Gene Identifier
Solyc11g007580.1
Transcript Identifier
Solyc11g007580.1.1
Gene Type
Coding gene
Location
SL2.50ch11 : 1814235-1823255 : negative

Family

Gene family
HOM04M000985
(140 genes in 29 species)
specific family

Descriptions

Description
HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain

Identifiers

Type Value
idSolyc11g007580.1.ITAG2.4
pacid36151867
tidSolyc11g007580.1.1.ITAG2.4
tidSolyc11g007580.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009836 IDAGene Ontologyfruit ripening, climacteric1
GO:0010154 IDAGene Ontologyfruit development1
GO:0006284 IEAInterProbase-excision repair
GO:0006281 IEAInterProDNA repair
GO:0050832 IEAPLAZA Integrative Orthologydefense response to fungusAT2G36490
GO:0006342 IEAPLAZA Integrative Orthologychromatin silencingAT2G36490
GO:0080111 IEAPLAZA Integrative OrthologyDNA demethylationAT2G36490
GO:0031936 IEAPLAZA Integrative Orthologynegative regulation of chromatin silencingAT2G36490
GO:0006306 IEAPLAZA Integrative OrthologyDNA methylationAT2G36490
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT5G04560
GO:0006349 IEAPLAZA Integrative Orthologyregulation of gene expression by genetic imprintingAT5G04560

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0035514 IDAGene OntologyDNA demethylase activity1
GO:0051539 IEAInterPro4 iron, 4 sulfur cluster binding
GO:0003824 IEAInterProcatalytic activity
GO:0003906 IEAPLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) lyase activityAT2G36490
GO:0019104 IEAPLAZA Integrative OrthologyDNA N-glycosylase activityAT2G36490
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT2G36490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0043078 IEAPLAZA Integrative Orthologypolar nucleusAT5G04560
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT2G36490

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003265HhH-GPD domain
IPR023170Helix-turn-helix, base-excision DNA repair, C-terminal
IPR028925Demeter, RRM-fold domain
IPR028924Permuted single zf-CXXC unit
IPR003651Endonuclease III-like, iron-sulphur cluster loop motif
IPR011257DNA glycosylase

Mapman id Description
12.5.3.1.Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)
No SignalP domains detected for this gene.