Gene: Solyc10g085560.1 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc10g085560.1
Transcript Identifier
Solyc10g085560.1.1
Gene Type
Coding gene
Location
SL2.50ch10 : 64678518-64682208 : negative

Family

Gene family
HOM04M001820
(84 genes in 26 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Histone deacetylase 2a-like (AHRD V1 ***- Q2XTE1_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type

Identifiers

Type Value
idSolyc10g085560.1.ITAG2.4
pacid36154110
tidSolyc10g085560.1.1.ITAG2.4
tidSolyc10g085560.1.1

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009294 IEAPLAZA Integrative OrthologyDNA mediated transformationAT3G44750
GO:0010162 IEAPLAZA Integrative Orthologyseed dormancy processAT3G44750
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G03740
GO:0009944 IEAPLAZA Integrative Orthologypolarity specification of adaxial/abaxial axisAT3G44750
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT5G03740
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT5G03740
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT5G03740
GO:0030422 IEAPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT2G27840

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT5G03740

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT5G03740
GO:0005774 IEAPLAZA Integrative Orthologyvacuolar membraneAT5G22650
GO:0005618 IEAPLAZA Integrative Orthologycell wallAT5G22650
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT5G22650
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G22650

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013087Zinc finger C2H2-type

Mapman id Description
12.3.2.2.Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase
No SignalP domains detected for this gene.