Gene: Solyc10g083640.1 (Solanum lycopersicum)

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Gene Identifier
Solyc10g083640.1
Transcript Identifier
Solyc10g083640.1.1
Gene Type
Coding gene
Location
SL2.50ch10 : 63431893-63435584 : negative

Family

Gene family
HOM04M001122
(126 genes in 29 species)
specific family
Subfamily
ORTHO04M001866
(83 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit

Identifiers

Type Value
idSolyc10g083640.1.ITAG2.4
pacid36156411
tidSolyc10g083640.1.1.ITAG2.4
tidSolyc10g083640.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009408 ISSGene Ontologyresponse to heat1
GO:0071537 ISSGene OntologyC3HC4-type RING finger domain-mediated complex assembly1
GO:0000398 IEAInterPromRNA splicing, via spliceosome
GO:0048573 IEAPLAZA Integrative Orthologyphotoperiodism, floweringAT5G42820

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723 IEAInterProRNA binding
GO:0003676 IEAInterPronucleic acid binding
GO:0046872 IEAInterPrometal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0089701 IEAInterProU2AF
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G42820

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009145U2 auxiliary factor small subunit
IPR000504RNA recognition motif domain
IPR000571Zinc finger, CCCH-type

Mapman id Description
16.4.1.2.11.1.RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.small subunit U2AF1/U2AF35
No SignalP domains detected for this gene.