PLAZA 4.0 Monocots gene overview : Solyc09g090620.1

Gene: Solyc09g090620.1 (Solanum lycopersicum)

Overview

Gene Identifier: Solyc09g090620.1
Transcript Identifier: Solyc09g090620.1.1
Gene Type: Coding gene
Location: SL2.50ch09 : 70078076-70078675 : positive

Family

Gene family: HOM04M000005
(3859 genes in 23 species)
specific family

Descriptions

Description: CC-NBS-LRR class disease resistance protein (AHRD V1 ***- C6FF62_SOYBN)

Identifiers

Type	Value
id	Solyc09g090620.1.ITAG2.4
pacid	36133700
tid	Solyc09g090620.1.1.ITAG2.4
tid	Solyc09g090620.1.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0046983	IEA	InterPro	protein dimerization activity
GO:0043531	IEA	PLAZA Homology (enrichment)	ADP binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Mapman id	Description
35.2	not assigned.not annotated

No SignalP domains detected for this gene.