Gene: Solyc09g082420.1 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc09g082420.1
Transcript Identifier
Solyc09g082420.1.1
Gene Type
Coding gene
Location
SL2.50ch09 : 68165644-68166784 : negative

Family

Gene family
HOM04M003481
(49 genes in 28 species)
specific family
Subfamily
ORTHO04M009921
(20 genes in 15 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

Description
Protein RDM1 (AHRD V1 ***- RDM1_ARATH); contains Interpro domain(s) IPR015270 Protein of unknown function DUF1950

Identifiers

Type Value
idSolyc09g082420.1.ITAG2.4
pacid36133061
tidSolyc09g082420.1.1.ITAG2.4
tidSolyc09g082420.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0044030 IEAInterProregulation of DNA methylation
GO:0070918 IEAPLAZA Integrative Orthologyproduction of small RNA involved in gene silencing by RNAAT3G22680
GO:0006306 IEAPLAZA Integrative OrthologyDNA methylationAT3G22680

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0043621 IEAPLAZA Integrative Orthologyprotein self-associationAT3G22680
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT3G22680

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0000419 IEAPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT3G22680

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR015270Protein RDM1

Mapman id Description
12.5.1.14.3.Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component RDM1
No SignalP domains detected for this gene.