Gene: Solyc09g011480.2 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc09g011480.2
Transcript Identifier
Solyc09g011480.2.1
Gene Type
Coding gene
Location
SL2.50ch09 : 4799367-4802106 : negative

Family

Gene family
HOM04M000336
(323 genes in 27 species)
specific family
Subfamily
ORTHO04M001361
(100 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Rop guanine nucleotide exchange factor 1 (AHRD V1 ***- ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE

Identifiers

Type Value
idSolyc09g011480.2.ITAG2.4
pacid36133584
tidSolyc09g011480.2.1.ITAG2.4
tidSolyc09g011480.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0080092 IEAPLAZA Tree-based Orthologyregulation of pollen tube growthAT4G38430
GO:0048364 IEAPLAZA Tree-based Orthologyroot developmentAT1G52240
GO:0080147 IEAPLAZA Tree-based Orthologyroot hair cell developmentAT1G52240
GO:0009664 IEAPLAZA Tree-based Orthologyplant-type cell wall organizationAT2G45890
GO:0048767 IEAPLAZA Tree-based Orthologyroot hair elongationAT2G45890
GO:0009793 IEAPLAZA Tree-based Orthologyembryo development ending in seed dormancyAT1G79860
GO:0009860 IEAPLAZA Tree-based Orthologypollen tube growthAT4G38430

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005089 IEAInterProRho guanyl-nucleotide exchange factor activity
GO:0005515 IEAPLAZA Tree-based Orthologyprotein bindingAT2G45890
GO:0005085 IEAPLAZA Tree-based Orthologyguanyl-nucleotide exchange factor activityAT3G24620
GO:0042802 IEAPLAZA Tree-based Orthologyidentical protein bindingAT3G24620

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0090406 IEAPLAZA Tree-based Orthologypollen tubeAT1G79860
GO:0016324 IEAPLAZA Tree-based Orthologyapical plasma membraneAT4G38430
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G02010
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmAT1G52240
GO:0005634 IEAPLAZA Tree-based OrthologynucleusAT1G52240
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT5G02010
GO:0009531 IEAPLAZA Tree-based Orthologysecondary cell wallAT2G45890

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR005512PRONE domain

Mapman id Description
27.4.3.1.Multi-process regulation.Rop-GTPase regulatory system.RopGEF guanine nucleotide exchange factor activities.exchange factor (PRONE)
No SignalP domains detected for this gene.