Gene: Solyc08g066500.2 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc08g066500.2
Transcript Identifier
Solyc08g066500.2.1
Gene Type
Coding gene
Location
SL2.50ch08 : 55206565-55211839 : negative

Family

Gene family
HOM04M000677
(189 genes in 27 species)
specific family
Subfamily
ORTHO04M000847
(136 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA

Identifiers

Type Value
idSolyc08g066500.2.ITAG2.4
pacid36149267
tidSolyc08g066500.2.1.ITAG2.4
tidSolyc08g066500.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:1905392 IEAPLAZA Tree-based Orthologyplant organ morphogenesisAT1G52150
GO:0010067 IEAPLAZA Integrative Orthologyprocambium histogenesisAT4G32880
GO:0010089 IEAPLAZA Integrative Orthologyxylem developmentAT4G32880
GO:0030154 IEAPLAZA Tree-based Orthologycell differentiationAT5G60690
GO:0009965 IEAPLAZA Tree-based Orthologyleaf morphogenesisAT1G52150
GO:0009943 IEAPLAZA Tree-based Orthologyadaxial/abaxial axis specificationAT1G30490
GO:0009944 IEAPLAZA Tree-based Orthologypolarity specification of adaxial/abaxial axisAT2G34710
GO:0045597 IEAPLAZA Integrative Orthologypositive regulation of cell differentiationAT4G32880
GO:0010072 IEAPLAZA Integrative Orthologyprimary shoot apical meristem specificationAT4G32880
GO:0010051 IEAPLAZA Tree-based Orthologyxylem and phloem pattern formationAT5G60690
GO:0010073 IEAPLAZA Tree-based Orthologymeristem maintenanceAT1G52150
GO:0009880 IEAPLAZA Tree-based Orthologyembryonic pattern specificationAT1G30490
GO:0010075 IEAPLAZA Tree-based Orthologyregulation of meristem growthAT1G52150
GO:0080060 IEAPLAZA Tree-based Orthologyintegument developmentAT2G34710
GO:0010014 IEAPLAZA Integrative Orthologymeristem initiationAT4G32880
GO:0048263 IEAPLAZA Tree-based Orthologydetermination of dorsal identityAT1G52150
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT4G32880
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT4G32880
GO:0009855 IEAPLAZA Tree-based Orthologydetermination of bilateral symmetryAT2G34710
GO:0009955 IEAPLAZA Tree-based Orthologyadaxial/abaxial pattern specificationAT2G34710
GO:0009956 IEAPLAZA Tree-based Orthologyradial pattern formationAT5G60690
GO:0008284 IEAPLAZA Integrative Orthologypositive regulation of cell proliferationAT4G32880
GO:0010087 IEAPLAZA Tree-based Orthologyphloem or xylem histogenesisAT1G52150

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0008289 IEAInterProlipid binding
GO:0003700 IEAInterProtranscription factor activity, sequence-specific DNA binding
GO:0005515 IEAPLAZA Tree-based Orthologyprotein bindingAT1G30490
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT5G60690
GO:0044212 IEAPLAZA Tree-based Orthologytranscription regulatory region DNA bindingAT5G60690

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G32880

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023393START-like domain
IPR001356Homeobox domain
IPR013978MEKHLA
IPR002913START domain
IPR004827Basic-leucine zipper domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.2.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP III)
No SignalP domains detected for this gene.