Gene: Solyc07g005450.2 (Solanum lycopersicum)

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Gene Identifier
Solyc07g005450.2
Transcript Identifier
Solyc07g005450.2.1
Gene Type
Coding gene
Location
SL2.50ch07 : 356678-364006 : negative

Family

Gene family
HOM04M001103
(127 genes in 29 species)
specific family
Subfamily
ORTHO04M003151
(59 genes in 28 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
RNA polymerase II C-terminal domain phosphatase-like 4 (AHRD V1 ***- CPL4_ARATH); contains Interpro domain(s) IPR011947 FCP1-like phosphatase, phosphatase domain

Identifiers

Type Value
idSolyc07g005450.2.ITAG2.4
pacid36162224
tidSolyc07g005450.2.1.ITAG2.4
tidSolyc07g005450.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT3G19600
GO:0048629 IEAPLAZA Integrative Orthologytrichome patterningAT5G58003
GO:0070940 IEAPLAZA Integrative Orthologydephosphorylation of RNA polymerase II C-terminal domainAT3G19600
GO:1900033 IEAPLAZA Integrative Orthologynegative regulation of trichome patterningAT5G58003
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT5G58003
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G58003
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT3G19600

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004721 IEAInterProphosphoprotein phosphatase activity
GO:0008420 IEAPLAZA Integrative OrthologyCTD phosphatase activityAT3G19600
GO:0008022 IEAPLAZA Integrative Orthologyprotein C-terminus bindingAT5G58003

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001357BRCT domain
IPR023214HAD-like domain
IPR004274FCP1 homology domain
IPR011947FCP1-like phosphatase, phosphatase domain

Mapman id Description
15.3.2.3.RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-II phosphatase
18.4.25.1.6.Protein modification.phosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.subcluster H/CPL3-4 phosphatase
No SignalP domains detected for this gene.