Gene: Solyc06g082460.1 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc06g082460.1
Transcript Identifier
Solyc06g082460.1.1
Gene Type
Coding gene
Location
SL2.50ch06 : 48258662-48259717 : positive

Family

Gene family
HOM04M000216
(436 genes in 27 species)
specific family

Descriptions

Description
Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant

Identifiers

Type Value
idSolyc06g082460.1.ITAG2.4
pacid36130434
tidSolyc06g082460.1.1.ITAG2.4
tidSolyc06g082460.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010154 IDAGene Ontologyfruit development1
GO:2000652 IEAPLAZA Integrative Orthologyregulation of secondary cell wall biogenesisAT1G06920
GO:1900457 IEAPLAZA Tree-based Orthologyregulation of brassinosteroid mediated signaling pathwayLOC_Os01g64430
GO:0009553 IEAPLAZA Tree-based Orthologyembryo sac developmentAT4G18830
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT2G30400
GO:0051510 IEAPLAZA Integrative Orthologyregulation of unidimensional cell growthAT5G01840

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G01840

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030863 IEAPLAZA Tree-based Orthologycortical cytoskeletonAT4G18830
GO:0005886 IEAPLAZA Tree-based Orthologyplasma membraneAT2G18500
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT5G01840
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmLOC_Os01g64430
GO:0005856 IEAPLAZA Integrative OrthologycytoskeletonAT5G01840
GO:0005634 IEAPLAZA Tree-based OrthologynucleusLOC_Os01g64430

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR025830DNA-binding domain, ovate family-like
IPR006458Ovate protein family, C-terminal

Mapman id Description
15.5.37.RNA biosynthesis.transcriptional regulation.transcription factor (OFP)
No SignalP domains detected for this gene.