Gene: Solyc06g051570.2 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc06g051570.2
Transcript Identifier
Solyc06g051570.2.1
Gene Type
Coding gene
Location
SL2.50ch06 : 35078678-35095574 : negative

Family

Gene family
HOM04M001901
(81 genes in 28 species)
specific family
Subfamily
ORTHO04M007370
(34 genes in 28 species)
specific family

Descriptions

Description
NF-X1 type zinc finger family protein (AHRD V1 **-- D7KKM7_ARALY); contains Interpro domain(s) IPR000967 Zinc finger, NF-X1-type

Identifiers

Type Value
idSolyc06g051570.2.ITAG2.4
pacid36130835
tidSolyc06g051570.2.1.ITAG2.4
tidSolyc06g051570.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:2000037 IEAPLAZA Integrative Orthologyregulation of stomatal complex patterningAT5G05660
GO:0042335 IEAPLAZA Integrative Orthologycuticle developmentAT5G05660
GO:0010310 IEAPLAZA Integrative Orthologyregulation of hydrogen peroxide metabolic processAT5G05660
GO:0007623 IEAPLAZA Integrative Orthologycircadian rhythmAT5G05660
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT5G05660
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT5G05660
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT5G05660
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G05660

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700 IEAInterProtranscription factor activity, sequence-specific DNA binding
GO:0008270 IEAInterProzinc ion binding
GO:0000987 IEAPLAZA Integrative Orthologycore promoter proximal region sequence-specific DNA bindingAT5G05660

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034078Transcription factor NFX1 family
IPR000967Zinc finger, NF-X1-type
IPR019786Zinc finger, PHD-type, conserved site
IPR001841Zinc finger, RING-type

Mapman id Description
15.5.53.6.RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (NF-X1)
No SignalP domains detected for this gene.