Gene: Solyc06g007130.2 (Solanum lycopersicum)

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Gene Identifier
Solyc06g007130.2
Transcript Identifier
Solyc06g007130.2.1
Gene Type
Coding gene
Location
SL2.50ch06 : 1182361-1184218 : negative

Family

Gene family
HOM04M000625
(200 genes in 29 species)
specific family
Subfamily
ORTHO04M001234
(105 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
Omega-3 fatty acid desaturase (AHRD V1 **** A9LNM9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1

Identifiers

Type Value
idSolyc06g007130.2.ITAG2.4
pacid36129205
tidSolyc06g007130.2.1.ITAG2.4
tidSolyc06g007130.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006636 IEPGene Ontologyunsaturated fatty acid biosynthetic process1
GO:0055114 IEAInterProoxidation-reduction process
GO:0006629 IEAInterProlipid metabolic process
GO:0006633 IEAPLAZA Tree-based Orthologyfatty acid biosynthetic processAT5G05580
GO:0080167 IEAPLAZA Integrative Orthologyresponse to karrikinAT2G29980
GO:0009266 IEAPLAZA Tree-based Orthologyresponse to temperature stimulusAT5G05580
GO:0009409 IEAPLAZA Tree-based Orthologyresponse to coldAT3G11170

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042389 IDAGene Ontologyomega-3 fatty acid desaturase activity1
GO:0016717 IEAInterProoxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005783 IDAGene Ontologyendoplasmic reticulum1
GO:0009941 IEAPLAZA Tree-based Orthologychloroplast envelopeAT5G05580
GO:0042170 IEAPLAZA Tree-based Orthologyplastid membraneAT3G11170
GO:0009507 IEAPLAZA Tree-based OrthologychloroplastAT3G11170

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR021863Fatty acid desaturase, N-terminal
IPR005804Fatty acid desaturase domain

Mapman id Description
5.1.7.3.Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.omega-3/omega-6 fatty acid desaturase (FAD2/3/6-8)
No SignalP domains detected for this gene.