Gene: Solyc05g009980.2 (Solanum lycopersicum)

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Gene Identifier
Solyc05g009980.2
Transcript Identifier
Solyc05g009980.2.1
Gene Type
Coding gene
Location
SL2.50ch05 : 4176495-4183120 : negative

Family

Gene family
HOM04M001766
(85 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Protein LSM14 homolog B (AHRD V1 *--- LS14B_MOUSE); contains Interpro domain(s) IPR019053 FFD and TFG box motifs

Identifiers

Type Value
idSolyc05g009980.2.ITAG2.4
pacid36146498
tidSolyc05g009980.2.1.ITAG2.4
tidSolyc05g009980.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0017148 IEAPLAZA Integrative Orthologynegative regulation of translationAT1G26110
GO:0033962 IEAPLAZA Integrative Orthologycytoplasmic mRNA processing body assemblyAT1G26110
GO:0010606 IEAPLAZA Integrative Orthologypositive regulation of cytoplasmic mRNA processing body assemblyAT1G26110
GO:0031087 IEAPLAZA Integrative Orthologydeadenylation-independent decapping of nuclear-transcribed mRNAAT1G26110

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT1G26110
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT1G26110
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G26110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT1G26110
GO:0000932 IEAPLAZA Integrative OrthologyP-bodyAT1G26110

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR025609Lsm14-like, N-terminal
IPR019050FDF domain
IPR025768TFG box
IPR025761FFD box
IPR025762DFDF domain
IPR010920LSM domain

Mapman id Description
16.8.2.2.3.RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.regulatory component DCP5
No SignalP domains detected for this gene.