Gene: Solyc04g076420.2 (Solanum lycopersicum)

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Gene Identifier
Solyc04g076420.2
Transcript Identifier
Solyc04g076420.2.1
Gene Type
Coding gene
Location
SL2.50ch04 : 61316385-61321106 : positive

Family

Gene family
HOM04M000527
(227 genes in 27 species)
specific family
Subfamily
ORTHO04M004002
(49 genes in 26 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
DsRNA-binding protein (AHRD V1 *-*- Q8GUQ1_BRARA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding

Identifiers

Type Value
idSolyc04g076420.2.ITAG2.4
pacid36143740
tidSolyc04g076420.2.1.ITAG2.4
tidSolyc04g076420.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0031054 IEAPLAZA Integrative Orthologypre-miRNA processingAT1G09700
GO:0035196 IEAPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT1G09700
GO:0009735 IEAPLAZA Integrative Orthologyresponse to cytokininAT1G09700
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT1G09700
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT1G09700
GO:0010589 IEAPLAZA Integrative Orthologyleaf proximal/distal pattern formationAT1G09700
GO:0010305 IEAPLAZA Integrative Orthologyleaf vascular tissue pattern formationAT1G09700
GO:0035279 IEAPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G09700
GO:0010267 IEAPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT1G09700

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003725 IEAInterProdouble-stranded RNA binding
GO:0035198 IEAPLAZA Integrative OrthologymiRNA bindingAT1G09700
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G09700

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0015030 IEAPLAZA Integrative OrthologyCajal bodyAT1G09700
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G09700
GO:0010445 IEAPLAZA Integrative Orthologynuclear dicing bodyAT1G09700

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR031147Double-stranded RNA-binding protein
IPR014720Double-stranded RNA-binding domain

Mapman id Description
16.10.2.1.2.RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component HYL1
No SignalP domains detected for this gene.