Gene: Solyc04g050930.2 (Solanum lycopersicum)

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Gene Identifier
Solyc04g050930.2
Transcript Identifier
Solyc04g050930.2.1
Gene Type
Coding gene
Location
SL2.50ch04 : 48984442-48986969 : negative

Family

Gene family
HOM04M005136
(38 genes in 28 species)
specific family

Descriptions

Description
Violaxanthin de-epoxidase

Identifiers

Type Value
idSolyc04g050930.2.ITAG2.4
pacid36142649
tidSolyc04g050930.2.1.ITAG2.4
tidSolyc04g050930.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009416 IEPGene Ontologyresponse to light stimulus1
GO:0055114 IEAInterProoxidation-reduction process
GO:0006631 IEAPLAZA Integrative Orthologyfatty acid metabolic processAT1G08550
GO:0016122 IEAPLAZA Integrative Orthologyxanthophyll metabolic processAT1G08550
GO:0010028 IEAPLAZA Integrative Orthologyxanthophyll cycleAT1G08550
GO:0009408 IEAPLAZA Integrative Orthologyresponse to heatAT1G08550
GO:0015994 IEAPLAZA Integrative Orthologychlorophyll metabolic processAT1G08550

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046422 IEAInterProviolaxanthin de-epoxidase activity
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G08550
GO:0019904 IEAPLAZA Integrative Orthologyprotein domain specific bindingAT1G08550

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507 IEAInterProchloroplast
GO:0009543 IEAPLAZA Integrative Orthologychloroplast thylakoid lumenAT1G08550
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidAT1G08550
GO:0030095 IEAPLAZA Integrative Orthologychloroplast photosystem IIAT1G08550
GO:0031977 IEAPLAZA Integrative Orthologythylakoid lumenAT1G08550

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012674Calycin
IPR010788VDE lipocalin domain
IPR022272Lipocalin family conserved site

Mapman id Description
1.1.1.5.1.3.1Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).xanthophyll cycle.violaxanthin de-epoxidase
9.1.6.2.2.Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.violaxanthin de-epoxidase (VDE)
No SignalP domains detected for this gene.