Gene: Solyc04g014870.2 (Solanum lycopersicum)

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Gene Identifier
Solyc04g014870.2
Transcript Identifier
Solyc04g014870.2.1
Gene Type
Coding gene
Location
SL2.50ch04 : 5125892-5130027 : positive

Family

Gene family
HOM04M000917
(149 genes in 27 species)
specific family
Subfamily
ORTHO04M004126
(48 genes in 26 species)
specific family

Descriptions

Description
RNA-dependent RNA polymerase (AHRD V1 ***- B3TNC1_9SOLA); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type

Identifiers

Type Value
idSolyc04g014870.2.ITAG2.4
pacid36141721
tidSolyc04g014870.2.1.ITAG2.4
tidSolyc04g014870.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0090065 IDAGene Ontologyregulation of production of siRNA involved in RNA interference1
GO:0031047 IDAGene Ontologygene silencing by RNA1
GO:0010267 IEAPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT3G49500
GO:0016246 IEAPLAZA Integrative OrthologyRNA interferenceAT3G49500
GO:0030422 IEAPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT3G49500
GO:0016441 IEAPLAZA Integrative Orthologyposttranscriptional gene silencingAT3G49500
GO:0051607 IEAPLAZA Integrative Orthologydefense response to virusAT3G49500
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT3G49500
GO:0048544 IEAPLAZA Integrative Orthologyrecognition of pollenAT3G49500
GO:0048467 IEAPLAZA Integrative Orthologygynoecium developmentAT3G49500
GO:0009616 IEAPLAZA Integrative Orthologyvirus induced gene silencingAT3G49500
GO:0048440 IEAPLAZA Integrative Orthologycarpel developmentAT3G49500
GO:0035196 IEAPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT3G49500
GO:0010492 IEAPLAZA Tree-based Orthologymaintenance of shoot apical meristem identityLOC_Os01g34350

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003968 IDA, IEAGene OntologyRNA-directed 5'-3' RNA polymerase activity1
GO:0003676 IEAInterPronucleic acid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G49500

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR007855RNA-dependent RNA polymerase, eukaryotic-type
IPR000504RNA recognition motif domain

Mapman id Description
16.10.1.1.RNA processing.mRNA silencing.transacting siRNA pathway.ssRNA polymerase (RDR6)
No SignalP domains detected for this gene.