Gene: Solyc04g005250.2 (Solanum lycopersicum)

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Gene Identifier
Solyc04g005250.2
Transcript Identifier
Solyc04g005250.2.1
Gene Type
Coding gene
Location
SL2.50ch04 : 186069-189122 : negative

Family

Gene family
HOM04M001067
(130 genes in 27 species)
specific family

Descriptions

Description
DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase

Identifiers

Type Value
idSolyc04g005250.2.ITAG2.4
pacid36143087
tidSolyc04g005250.2.1.ITAG2.4
tidSolyc04g005250.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010154 IDAGene Ontologyfruit development1
GO:0009836 IEPGene Ontologyfruit ripening, climacteric1
GO:0006306 IEAInterProDNA methylation
GO:0050832 IEAPLAZA Integrative Orthologydefense response to fungusAT5G14620
GO:0051567 IEAPLAZA Integrative Orthologyhistone H3-K9 methylationAT5G14620
GO:0009749 IEAPLAZA Integrative Orthologyresponse to glucoseAT5G15380
GO:0048573 IEAPLAZA Integrative Orthologyphotoperiodism, floweringAT5G15380
GO:0009744 IEAPLAZA Integrative Orthologyresponse to sucroseAT5G15380
GO:0006346 IEAPLAZA Integrative Orthologymethylation-dependent chromatin silencingAT5G15380
GO:0009723 IEAPLAZA Tree-based Orthologyresponse to ethyleneSolyc02g062740.2
GO:0009750 IEAPLAZA Integrative Orthologyresponse to fructoseAT5G15380
GO:0016458 IEAPLAZA Integrative Orthologygene silencingAT5G14620

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G14620
GO:0003886 IEAPLAZA Integrative OrthologyDNA (cytosine-5-)-methyltransferase activityAT5G15380
GO:0009008 IEAPLAZA Integrative OrthologyDNA-methyltransferase activityAT5G14620

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Tree-based OrthologynucleusAT3G17310
GO:0005654 IEAPLAZA Integrative OrthologynucleoplasmAT5G14620

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR029063S-adenosyl-L-methionine-dependent methyltransferase
IPR015940Ubiquitin-associated domain
IPR030380SAM-dependent methyltransferase DRM

Mapman id Description
12.5.1.11.Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.de novo DNA methylase (DRM)
No SignalP domains detected for this gene.