PLAZA 4.0 Monocots gene overview : Solyc03g082510.1

Gene: Solyc03g082510.1 (Solanum lycopersicum)

Overview

Gene Identifier: Solyc03g082510.1
Transcript Identifier: Solyc03g082510.1.1
Gene Type: Coding gene
Location: SL2.50ch03 : 52438391-52438735 : negative

Family

Gene family: HOM04M000079
(1034 genes in 27 species)
specific family
Subfamily: ORTHO04M000983
(124 genes in 24 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: Auxin-responsive family protein (AHRD V1 **-- D7M515_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein

Identifiers

Type	Value
id	Solyc03g082510.1.ITAG2.4
pacid	36134652
tid	Solyc03g082510.1.1.ITAG2.4
tid	Solyc03g082510.1.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
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...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009414	IDA	Gene Ontology	response to water deprivation	1
GO:0009734	IDA	Gene Ontology	auxin-activated signaling pathway	1
GO:0009651	IDA	Gene Ontology	response to salt stress	1
GO:0009409	IDA	Gene Ontology	response to cold	1
GO:0009733	IEA	InterPro	response to auxin

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003676	Small auxin-up RNA

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.