PLAZA 4.0 Monocots gene overview : Solyc02g069270.2

Gene: Solyc02g069270.2 (Solanum lycopersicum)

Overview

Gene Identifier: Solyc02g069270.2
Transcript Identifier: Solyc02g069270.2.1
Gene Type: Coding gene
Location: SL2.50ch02 : 39214064-39217971 : positive

Family

Gene family: HOM04M000162
(549 genes in 29 species)
specific family
Subfamily: ORTHO04M005103
(42 genes in 18 species)
specific family
Duplication type: Tandem duplicate

Descriptions

Description: ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi

Identifiers

Type	Value
id	Solyc02g069270.2.ITAG2.4
pacid	36158864
tid	Solyc02g069270.2.1.ITAG2.4
tid	Solyc02g069270.2.1

Toolbox

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0035195	IDA	Gene Ontology	gene silencing by miRNA	1
GO:0042742	IEA	PLAZA Integrative Orthology	defense response to bacterium	AT1G31280
GO:0019048	IEA	PLAZA Integrative Orthology	modulation by virus of host morphology or physiology	AT1G31280
GO:0051607	IEA	PLAZA Integrative Orthology	defense response to virus	AT1G31290

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	IEA	InterPro	protein binding
GO:0003729	IEA	PLAZA Integrative Orthology	mRNA binding	AT1G31280
GO:0035197	IEA	PLAZA Integrative Orthology	siRNA binding	AT1G31280

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT1G31280
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G31280

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012337	Ribonuclease H-like domain
IPR003100	PAZ domain
IPR014811	Argonaute, linker 1 domain
IPR032472	Argonaute linker 2 domain
IPR032474	Protein argonaute, N-terminal
IPR003165	Piwi domain

Mapman id	Description
12.5.1.15.2	.Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.siRNA-binding factor (AGO2)

No SignalP domains detected for this gene.