PLAZA 4.0 Monocots gene overview : Solyc01g079620.2

Gene: Solyc01g079620.2 (Solanum lycopersicum)

Overview

Gene Identifier: Solyc01g079620.2
Transcript Identifier: Solyc01g079620.2.1
Gene Type: Coding gene
Location: SL2.50ch01 : 78744840-78747976 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: Myb 12 transcription factor (AHRD V1 **-- D2EBC3_9SOLN); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain

Identifiers

Type	Value
id	Solyc01g079620.2.ITAG2.4
pacid	36137733
tid	Solyc01g079620.2.1.ITAG2.4
tid	Solyc01g079620.2.1

Toolbox

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...the orthologs using the Integrative Orthology Viewer.
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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
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Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009699	IMP	Gene Ontology	phenylpropanoid biosynthetic process	1
GO:0009963	IMP	Gene Ontology	positive regulation of flavonoid biosynthetic process	1
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT2G47460
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT2G47460
GO:0010224	IEA	PLAZA Integrative Orthology	response to UV-B	AT3G62610
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT3G62610
GO:0009813	IEA	PLAZA Integrative Orthology	flavonoid biosynthetic process	AT2G47460
GO:0048640	IEA	PLAZA Integrative Orthology	negative regulation of developmental growth	AT3G62610
GO:1900386	IEA	PLAZA Integrative Orthology	positive regulation of flavonol biosynthetic process	AT3G62610
GO:0008285	IEA	PLAZA Integrative Orthology	negative regulation of cell proliferation	AT3G62610
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT2G47460
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT2G47460
GO:0051555	IEA	PLAZA Integrative Orthology	flavonol biosynthetic process	AT3G62610

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT2G47460

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.