Gene: Solyc01g008600.2 (Solanum lycopersicum)

Overview top

Gene Identifier
Solyc01g008600.2
Transcript Identifier
Solyc01g008600.2.1
Gene Type
Coding gene
Location
SL2.50ch01 : 2684963-2688545 : positive

Family

Gene family
HOM04M000612
(204 genes in 27 species)
specific family
Subfamily
ORTHO04M001112
(114 genes in 24 species)
specific family

Descriptions

Description
Zinc finger CCCH domain-containing protein 53 (AHRD V1 ***- C3H53_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type

Identifiers

Type Value
idSolyc01g008600.2.ITAG2.4
pacid36140422
tidSolyc01g008600.2.1.ITAG2.4
tidSolyc01g008600.2.1

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0071537 ISSGene OntologyC3HC4-type RING finger domain-mediated complex assembly1
GO:0042630 ISSGene Ontologybehavioral response to water deprivation1
GO:0070417 ISSGene Ontologycellular response to cold1
GO:0009737 ISSGene Ontologyresponse to abscisic acid1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046872 IEAInterPrometal ion binding
GO:0003676 IEAInterPronucleic acid binding
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT3G51950

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009505 IEAPLAZA Tree-based Orthologyplant-type cell wallAT3G52980

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR034365AtC3H46-like, RNA recognition motif
IPR000571Zinc finger, CCCH-type
IPR000504RNA recognition motif domain

Mapman id Description
15.5.16.RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)
No SignalP domains detected for this gene.