PLAZA 4.0 Monocots gene overview : Sobic.009G113800

Gene: Sobic.009G113800 (Sorghum bicolor)

Overview

Gene Identifier: Sobic.009G113800
Transcript Identifier: Sobic.009G113800.2
Gene Type: Coding gene
Location: Chr09 : 45481791-45484563 : positive

Family

Gene family: HOM04M000089
(940 genes in 28 species)
specific family
Subfamily: ORTHO04M000042
(839 genes in 28 species)
specific family
Duplication type: Tandem duplicate

Descriptions

Description: similar to Putative beta-glucosidase

Identifiers

Type	Value
alias	Sb09g018160
ancestorIdentifier	Sobic.009G113800.v2.1
id	Sobic.009G113800.v3.1
pacid	32737277
tid	Sobic.009G113800.2.v3.1
tid	Sobic.009G113800.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	InterPro	carbohydrate metabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004553	IEA	InterPro	hydrolase activity, hydrolyzing O-glycosyl compounds

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001360	Glycoside hydrolase family 1
IPR033132	Glycosyl hydrolases family 1, N-terminal conserved site
IPR017853	Glycoside hydrolase superfamily

Mapman id	Description
50.3.2	.Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase

No SignalP domains detected for this gene.