Gene: Sobic.008G115000 (Sorghum bicolor)

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Gene Identifier
Sobic.008G115000
Transcript Identifier
Sobic.008G115000.1
Gene Type
Coding gene
Location
Chr08 : 52390518-52396281 : negative

Family

Gene family
HOM04M001161
(123 genes in 25 species)
specific family

Descriptions

Description
similar to Vernalization insensitive 3

Identifiers

Type Value
aliasSb08g016860
ancestorIdentifierSobic.008G115000.v2.1
ancestorIdentifierSobic.008G115000.1.v2.1
idSobic.008G115000.v3.1
pacid32742018
tidSobic.008G115000.1.v3.1
tidSobic.008G115000.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010048 IEAPLAZA Integrative Orthologyvernalization responseAT3G24440
GO:0070417 IEAPLAZA Tree-based Orthologycellular response to coldAT5G57380
GO:0010228 IEAPLAZA Tree-based Orthologyvegetative to reproductive phase transition of meristemAT4G30200
GO:0016571 IEAPLAZA Integrative Orthologyhistone methylationAT3G24440
GO:0051571 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K4 methylationAT3G24440
GO:0048575 IEAPLAZA Integrative Orthologyshort-day photoperiodism, floweringAT3G24440
GO:0048587 IEAPLAZA Tree-based Orthologyregulation of short-day photoperiodism, floweringAT4G30200
GO:0009909 IEAPLAZA Integrative Orthologyregulation of flower developmentAT3G24440
GO:0001666 IEAPLAZA Tree-based Orthologyresponse to hypoxiaAT5G57380
GO:0032922 IEAPLAZA Tree-based Orthologycircadian regulation of gene expressionAT4G30200
GO:0048572 IEAPLAZA Integrative Orthologyshort-day photoperiodismAT3G24440
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT3G24440
GO:1900111 IEAPLAZA Tree-based Orthologypositive regulation of histone H3-K9 dimethylationAT4G30200
GO:0061087 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K27 methylationAT3G24440
GO:0031062 IEAPLAZA Integrative Orthologypositive regulation of histone methylationAT3G24440
GO:0045814 IEAPLAZA Integrative Orthologynegative regulation of gene expression, epigeneticAT3G24440

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0035064 IEAPLAZA Tree-based Orthologymethylated histone bindingAT4G30200
GO:0042802 IEAPLAZA Tree-based Orthologyidentical protein bindingAT4G30200

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031519 IEAPLAZA Tree-based OrthologyPcG protein complexAT4G30200
GO:0009506 IEAPLAZA Tree-based OrthologyplasmodesmaAT4G30200
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G24440
GO:0005677 IEAPLAZA Integrative Orthologychromatin silencing complexAT3G24440
GO:0016607 IEAPLAZA Integrative Orthologynuclear speckAT3G24440

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003961Fibronectin type III
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain

Mapman id Description
12.3.3.1.2.2.Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)
No SignalP domains detected for this gene.