Gene: Sobic.006G049200 (Sorghum bicolor)

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Gene Identifier
Sobic.006G049200
Transcript Identifier
Sobic.006G049200.1
Gene Type
Coding gene
Location
Chr06 : 35678851-35684742 : positive

Family

Gene family
HOM04M005136
(38 genes in 28 species)
specific family

Descriptions

Description
similar to Os04g0379700 protein

Identifiers

Type Value
aliasSb06g012950
ancestorIdentifierSobic.006G049200.v2.1
ancestorIdentifierSobic.006G049200.1.v2.1
idSobic.006G049200.v3.1
pacid32762737
tidSobic.006G049200.1.v3.1
tidSobic.006G049200.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0055114 IEAInterProoxidation-reduction process
GO:0016122 IEAPLAZA Integrative Orthologyxanthophyll metabolic processAT1G08550
GO:0006631 IEAPLAZA Integrative Orthologyfatty acid metabolic processAT1G08550
GO:0010028 IEAPLAZA Integrative Orthologyxanthophyll cycleAT1G08550
GO:0009408 IEAPLAZA Integrative Orthologyresponse to heatAT1G08550
GO:0015994 IEAPLAZA Integrative Orthologychlorophyll metabolic processAT1G08550

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046422 IEAInterProviolaxanthin de-epoxidase activity
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G08550
GO:0019904 IEAPLAZA Integrative Orthologyprotein domain specific bindingAT1G08550

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507 IEAInterProchloroplast
GO:0009543 IEAPLAZA Integrative Orthologychloroplast thylakoid lumenAT1G08550
GO:0030095 IEAPLAZA Integrative Orthologychloroplast photosystem IIAT1G08550
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidAT1G08550
GO:0031977 IEAPLAZA Integrative Orthologythylakoid lumenAT1G08550

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012674Calycin
IPR010788VDE lipocalin domain

Mapman id Description
1.1.1.5.1.3.1Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).xanthophyll cycle.violaxanthin de-epoxidase
9.1.6.2.2.Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.violaxanthin de-epoxidase (VDE)
No SignalP domains detected for this gene.