Gene: Sobic.004G317000 (Sorghum bicolor)

Overview top

Gene Identifier
Sobic.004G317000
Transcript Identifier
Sobic.004G317000.2
Gene Type
Coding gene
Location
Chr04 : 65267342-65268752 : negative

Family

Gene family
HOM04M000323
(332 genes in 27 species)
specific family
Subfamily
ORTHO04M000242
(305 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
similar to Putative growth-regulating factor 3

Identifiers

Type Value
aliasSb04g034800
ancestorIdentifierSobic.004G317000.v2.1
ancestorIdentifierSobic.004G317000.2.v2.1
idSobic.004G317000.v3.1
pacid32746143
tidSobic.004G317000.2.v3.1
tidSobic.004G317000.2

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAInterProtranscription, DNA-templated
GO:0032502 IEAInterProdevelopmental process
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0050826 IEAPLAZA Integrative Orthologyresponse to freezingAT2G06200
GO:0006995 IEAPLAZA Tree-based Orthologycellular response to nitrogen starvationAT2G36400
GO:0009624 IEAPLAZA Tree-based Orthologyresponse to nematodeAT2G36400
GO:0048528 IEAPLAZA Tree-based Orthologypost-embryonic root developmentAT2G45480
GO:0042742 IEAPLAZA Integrative Orthologydefense response to bacteriumAT2G06200
GO:0009742 IEAPLAZA Integrative Orthologybrassinosteroid mediated signaling pathwayAT2G06200
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionAT3G13960
GO:0080167 IEAPLAZA Tree-based Orthologyresponse to karrikinAT5G53660
GO:0010114 IEAPLAZA Tree-based Orthologyresponse to red lightAT5G53660
GO:0016036 IEAPLAZA Tree-based Orthologycellular response to phosphate starvationAT2G36400
GO:0061062 IEAPLAZA Tree-based Orthologyregulation of nematode larval developmentAT2G36400
GO:0019222 IEAPLAZA Tree-based Orthologyregulation of metabolic processAT4G24150
GO:0019760 IEAPLAZA Tree-based Orthologyglucosinolate metabolic processAT2G22840
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT3G13960
GO:0010218 IEAPLAZA Tree-based Orthologyresponse to far red lightAT5G53660
GO:0051365 IEAPLAZA Tree-based Orthologycellular response to potassium ion starvationAT2G36400
GO:0009409 IEAPLAZA Tree-based Orthologyresponse to coldAT2G36400
GO:0048364 IEAPLAZA Tree-based Orthologyroot developmentAT2G36400
GO:0009631 IEAPLAZA Tree-based Orthologycold acclimationAT2G36400
GO:0008285 IEAPLAZA Tree-based Orthologynegative regulation of cell proliferationAT2G36400

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005524 IEAInterProATP binding
GO:0005515 IEAPLAZA Tree-based Orthologyprotein bindingAT2G22840
GO:0005509 IEAPLAZA Tree-based Orthologycalcium ion bindingAT2G45480
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT2G36400
GO:0044212 IEAPLAZA Tree-based Orthologytranscription regulatory region DNA bindingAT2G36400
GO:0045309 IEAPLAZA Tree-based Orthologyprotein phosphorylated amino acid bindingAT2G22840

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0016020 IEAPLAZA Tree-based OrthologymembraneAT2G22840
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT3G13960
GO:0005618 IEAPLAZA Integrative Orthologycell wallAT3G13960
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmAT2G45480
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT3G13960
GO:0009941 IEAPLAZA Tree-based Orthologychloroplast envelopeAT4G24150
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT3G13960
GO:0048046 IEAPLAZA Tree-based OrthologyapoplastAT2G22840
GO:0009506 IEAPLAZA Tree-based OrthologyplasmodesmaAT5G53660
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT2G06200
GO:0005773 IEAPLAZA Tree-based OrthologyvacuoleAT2G36400
GO:0005774 IEAPLAZA Tree-based Orthologyvacuolar membraneAT4G37740
GO:0005794 IEAPLAZA Integrative OrthologyGolgi apparatusAT3G13960
GO:0009570 IEAPLAZA Tree-based Orthologychloroplast stromaAT2G22840

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR031137Growth-regulating factor
IPR014978Glutamine-Leucine-Glutamine, QLQ
IPR014977WRC domain

Mapman id Description
15.5.52.1.RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.component GRF
No SignalP domains detected for this gene.