Gene: Sobic.004G056000 (Sorghum bicolor)

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Gene Identifier
Sobic.004G056000
Transcript Identifier
Sobic.004G056000.2
Gene Type
Coding gene
Location
Chr04 : 4507176-4509837 : negative

Family

Gene family
HOM04M000038
(1510 genes in 29 species)
specific family
Subfamily
ORTHO04M000013
(1412 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
similar to MADS-box protein ZMM17

Identifiers

Type Value
aliasSb04g004736
ancestorIdentifierSobic.004G056000.v2.1
ancestorIdentifierSobic.004G056000.2.v2.1
idSobic.004G056000.v3.1
pacid32748390
tidSobic.004G056000.2.v3.1
tidSobic.004G056000.2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045944 IEAInterPropositive regulation of transcription from RNA polymerase II promoter
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0048481 IEAPLAZA Integrative Orthologyplant ovule developmentAT5G23260
GO:2000029 IEAPLAZA Integrative Orthologyregulation of proanthocyanidin biosynthetic processAT5G23260
GO:0048316 IEAPLAZA Integrative Orthologyseed developmentAT5G23260
GO:0080155 IEAPLAZA Integrative Orthologyregulation of double fertilization forming a zygote and endospermAT5G23260
GO:0048530 IEAPLAZA Integrative Orthologyfruit morphogenesisAT1G31140
GO:0048510 IEAPLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phaseAT1G31140
GO:0030308 IEAPLAZA Integrative Orthologynegative regulation of cell growthAT1G31140
GO:0010154 IEAPLAZA Integrative Orthologyfruit developmentAT1G31140
GO:0008360 IEAPLAZA Integrative Orthologyregulation of cell shapeAT5G23260
GO:0080060 IEAPLAZA Integrative Orthologyintegument developmentAT1G31140

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000977 IEAInterProRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677 IEAInterProDNA binding
GO:0046983 IEAInterProprotein dimerization activity
GO:0003700 IEAInterProtranscription factor activity, sequence-specific DNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G31140

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR033896MADS MEF2-like
IPR002100Transcription factor, MADS-box
IPR002487Transcription factor, K-box

Mapman id Description
15.5.14.RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)
No SignalP domains detected for this gene.