PLAZA 4.0 Monocots gene overview : Sobic.003G044900

Gene: Sobic.003G044900 (Sorghum bicolor)

Overview

Gene Identifier: Sobic.003G044900
Transcript Identifier: Sobic.003G044900.1
Gene Type: Coding gene
Location: Chr03 : 4111977-4114270 : positive

Family

Gene family: HOM04M000122
(709 genes in 27 species)
specific family
Subfamily: ORTHO04M000070
(641 genes in 27 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: similar to Auxin-responsive protein IAA1

Identifiers

Type	Value
alias	Sb03g003940
ancestorIdentifier	Sobic.003G044900.v2.1
ancestorIdentifier	Sobic.003G044900.1.v2.1
id	Sobic.003G044900.v3.1
pacid	32727675
tid	Sobic.003G044900.1.v3.1
tid	Sobic.003G044900.1

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0010200	IEA	PLAZA Tree-based Orthology	response to chitin	AT1G04100
GO:0010205	IEA	PLAZA Tree-based Orthology	photoinhibition	AT3G16500
GO:0010600	IEA	PLAZA Tree-based Orthology	regulation of auxin biosynthetic process	Solyc09g090910.1
GO:0045040	IEA	PLAZA Tree-based Orthology	protein import into mitochondrial outer membrane	AT4G29080
GO:0009737	IEA	PLAZA Tree-based Orthology	response to abscisic acid	AT3G16500
GO:0006109	IEA	PLAZA Tree-based Orthology	regulation of carbohydrate metabolic process	AT4G29080
GO:0006626	IEA	PLAZA Tree-based Orthology	protein targeting to mitochondrion	AT4G29080
GO:0060777	IEA	PLAZA Tree-based Orthology	compound leaf morphogenesis	Solyc04g076850.2
GO:0009745	IEA	PLAZA Tree-based Orthology	sucrose mediated signaling	AT3G16500
GO:0006950	IEA	PLAZA Tree-based Orthology	response to stress	Solyc04g076850.2
GO:0009867	IEA	PLAZA Tree-based Orthology	jasmonic acid mediated signaling pathway	AT3G16500
GO:0080167	IEA	PLAZA Tree-based Orthology	response to karrikin	AT4G29080
GO:1901332	IEA	PLAZA Tree-based Orthology	negative regulation of lateral root development	AT2G22670
GO:0010051	IEA	PLAZA Tree-based Orthology	xylem and phloem pattern formation	AT1G04550
GO:0080086	IEA	PLAZA Integrative Orthology	stamen filament development	AT3G15540
GO:0010252	IEA	PLAZA Tree-based Orthology	auxin homeostasis	Solyc12g096980.1
GO:0010311	IEA	PLAZA Tree-based Orthology	lateral root formation	AT2G22670
GO:0010114	IEA	PLAZA Tree-based Orthology	response to red light	AT4G32280
GO:0016036	IEA	PLAZA Tree-based Orthology	cellular response to phosphate starvation	AT3G16500
GO:0009408	IEA	PLAZA Tree-based Orthology	response to heat	Solyc12g096980.1
GO:0009409	IEA	PLAZA Tree-based Orthology	response to cold	AT3G16500
GO:0009414	IEA	PLAZA Tree-based Orthology	response to water deprivation	Solyc03g121060.2
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT4G14560
GO:0009734	IEA	PLAZA Tree-based Orthology	auxin-activated signaling pathway	AT5G65670
GO:0009611	IEA	PLAZA Tree-based Orthology	response to wounding	AT3G23050
GO:0009651	IEA	PLAZA Tree-based Orthology	response to salt stress	AT3G16500
GO:0010102	IEA	PLAZA Tree-based Orthology	lateral root morphogenesis	AT4G14550
GO:0010224	IEA	PLAZA Tree-based Orthology	response to UV-B	AT3G16500
GO:0031540	IEA	PLAZA Tree-based Orthology	regulation of anthocyanin biosynthetic process	AT3G16500
GO:0010588	IEA	PLAZA Tree-based Orthology	cotyledon vascular tissue pattern formation	AT2G46990
GO:0031542	IEA	PLAZA Tree-based Orthology	positive regulation of anthocyanin biosynthetic process	AT3G16500
GO:0019430	IEA	PLAZA Tree-based Orthology	removal of superoxide radicals	AT3G16500
GO:0009718	IEA	PLAZA Tree-based Orthology	anthocyanin-containing compound biosynthetic process	AT3G16500
GO:0009723	IEA	PLAZA Tree-based Orthology	response to ethylene	AT3G16500
GO:0009647	IEA	PLAZA Tree-based Orthology	skotomorphogenesis	AT2G46990
GO:0009880	IEA	PLAZA Tree-based Orthology	embryonic pattern specification	AT1G04550
GO:0010154	IEA	PLAZA Tree-based Orthology	fruit development	Solyc04g076850.2
GO:0050832	IEA	PLAZA Tree-based Orthology	defense response to fungus	AT3G16500
GO:0010930	IEA	PLAZA Tree-based Orthology	negative regulation of auxin mediated signaling pathway	Solyc04g076850.2
GO:0010218	IEA	PLAZA Tree-based Orthology	response to far red light	AT4G32280
GO:0048367	IEA	PLAZA Tree-based Orthology	shoot system development	AT3G17600
GO:0045892	IEA	PLAZA Tree-based Orthology	negative regulation of transcription, DNA-templated	AT1G04550
GO:0009704	IEA	PLAZA Integrative Orthology	de-etiolation	AT1G52830
GO:0009628	IEA	PLAZA Tree-based Orthology	response to abiotic stimulus	Solyc03g121060.2
GO:0048364	IEA	PLAZA Tree-based Orthology	root development	AT3G62100
GO:0009630	IEA	PLAZA Tree-based Orthology	gravitropism	AT3G62100
GO:0009555	IEA	PLAZA Tree-based Orthology	pollen development	AT2G01200
GO:1900057	IEA	PLAZA Tree-based Orthology	positive regulation of leaf senescence	AT1G04250
GO:0009753	IEA	PLAZA Tree-based Orthology	response to jasmonic acid	AT3G16500
GO:0009791	IEA	PLAZA Tree-based Orthology	post-embryonic development	Solyc09g065850.2
GO:0009793	IEA	PLAZA Tree-based Orthology	embryo development ending in seed dormancy	AT2G01200
GO:1902074	IEA	PLAZA Tree-based Orthology	response to salt	Solyc03g121060.2
GO:0010262	IEA	PLAZA Tree-based Orthology	somatic embryogenesis	AT3G62100

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0042802	IEA	PLAZA Integrative Orthology	identical protein binding	AT4G14560
GO:0003700	IEA	PLAZA Tree-based Orthology	transcription factor activity, sequence-specific DNA binding	Solyc04g076850.2
GO:0003993	IEA	PLAZA Tree-based Orthology	acid phosphatase activity	AT3G16500
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT4G14560
GO:0044212	IEA	PLAZA Integrative Orthology	transcription regulatory region DNA binding	AT4G14560
GO:0008195	IEA	PLAZA Tree-based Orthology	phosphatidate phosphatase activity	AT3G16500
GO:0030943	IEA	PLAZA Tree-based Orthology	mitochondrion targeting sequence binding	AT4G29080

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	InterPro	nucleus
GO:0010287	IEA	PLAZA Tree-based Orthology	plastoglobule	AT3G16500
GO:0005739	IEA	PLAZA Tree-based Orthology	mitochondrion	AT4G29080
GO:0005737	IEA	PLAZA Tree-based Orthology	cytoplasm	AT2G22670
GO:0005740	IEA	PLAZA Tree-based Orthology	mitochondrial envelope	AT4G29080
GO:0009505	IEA	PLAZA Tree-based Orthology	plant-type cell wall	AT3G16500
GO:0009941	IEA	PLAZA Tree-based Orthology	chloroplast envelope	AT4G29080
GO:0010319	IEA	PLAZA Tree-based Orthology	stromule	AT3G16500
GO:0005768	IEA	PLAZA Tree-based Orthology	endosome	AT4G29080
GO:0031977	IEA	PLAZA Tree-based Orthology	thylakoid lumen	AT3G16500
GO:0005802	IEA	PLAZA Tree-based Orthology	trans-Golgi network	AT4G29080
GO:0005887	IEA	PLAZA Tree-based Orthology	integral component of plasma membrane	AT3G16500
GO:0009579	IEA	PLAZA Tree-based Orthology	thylakoid	AT3G16500
GO:0009535	IEA	PLAZA Tree-based Orthology	chloroplast thylakoid membrane	AT3G16500
GO:0009534	IEA	PLAZA Tree-based Orthology	chloroplast thylakoid	AT3G16500
GO:0009570	IEA	PLAZA Tree-based Orthology	chloroplast stroma	AT3G16500
GO:0005886	IEA	PLAZA Tree-based Orthology	plasma membrane	AT3G16500
GO:0005829	IEA	PLAZA Tree-based Orthology	cytosol	AT3G16500
GO:0009506	IEA	PLAZA Tree-based Orthology	plasmodesma	AT4G28640
GO:0009507	IEA	PLAZA Tree-based Orthology	chloroplast	AT3G16500
GO:0005794	IEA	PLAZA Tree-based Orthology	Golgi apparatus	AT4G29080

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003311	AUX/IAA protein
IPR033389	AUX/IAA domain
IPR000270	PB1 domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.