Gene: Sobic.001G049600 (Sorghum bicolor)

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Gene Identifier
Sobic.001G049600
Transcript Identifier
Sobic.001G049600.1
Gene Type
Coding gene
Location
Chr01 : 3625117-3631052 : negative

Family

Gene family
HOM04M003160
(53 genes in 28 species)
specific family

Descriptions

Description
similar to Squalene synthase

Identifiers

Type Value
aliasSb01g004550
ancestorIdentifierSobic.001G049600.v2.1
ancestorIdentifierSobic.001G049600.1.v2.1
idSobic.001G049600.v3.1
pacid32756281
tidSobic.001G049600.1.v3.1
tidSobic.001G049600.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006696 IEAInterProergosterol biosynthetic process
GO:0009058 IEAInterProbiosynthetic process
GO:0008610 IEAInterProlipid biosynthetic process
GO:0016126 IEAPLAZA Integrative Orthologysterol biosynthetic processAT4G34640

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004310 IEAInterProfarnesyl-diphosphate farnesyltransferase activity
GO:0051996 IEAInterProsqualene synthase activity
GO:0016740 IEAInterProtransferase activity
GO:0016765 IEAInterProtransferase activity, transferring alkyl or aryl (other than methyl) groups

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016021 IEAInterProintegral component of membrane
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT4G34640
GO:0005783 IEAPLAZA Integrative Orthologyendoplasmic reticulumAT4G34640
GO:0005789 IEAPLAZA Integrative Orthologyendoplasmic reticulum membraneAT4G34640

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR033904Trans-Isoprenyl Diphosphate Synthases, head-to-head
IPR008949Isoprenoid synthase domain
IPR002060Squalene/phytoene synthase
IPR019845Squalene/phytoene synthase, conserved site
IPR006449Farnesyl-diphosphate farnesyltransferase

Mapman id Description
9.1.5.1.Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene synthase
No SignalP domains detected for this gene.