PLAZA 4.0 Monocots gene overview : Seita.J029100

Gene: Seita.J029100 (Setaria italica)

Overview

Gene Identifier: Seita.J029100
Transcript Identifier: Seita.J029100.1
Gene Type: Coding gene
Location: scaffold_255 : 1404-2193 : negative

Family

Gene family: HOM04M000182
(507 genes in 27 species)
specific family
Subfamily: ORTHO04M000773
(145 genes in 24 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si020916m.g
ancestorIdentifier	Si020916m.g.version2.1
ancestorIdentifier	Si020916m.version2.1
id	Seita.J029100.v2.2
pacid	32706047
tid	Seita.J029100.1.v2.2
tid	Seita.J029100.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006032	IEA	InterPro	chitin catabolic process
GO:0016998	IEA	InterPro	cell wall macromolecule catabolic process
GO:0005975	IEA	InterPro	carbohydrate metabolic process
GO:0009615	IEA	PLAZA Integrative Orthology	response to virus	AT2G43570
GO:0009620	IEA	PLAZA Integrative Orthology	response to fungus	AT2G43580
GO:0072722	IEA	PLAZA Integrative Orthology	response to amitrole	AT2G43570
GO:0010150	IEA	PLAZA Integrative Orthology	leaf senescence	AT2G43570
GO:0009627	IEA	PLAZA Integrative Orthology	systemic acquired resistance	AT2G43570
GO:0010272	IEA	PLAZA Integrative Orthology	response to silver ion	AT2G43570

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004568	IEA	InterPro	chitinase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT2G43610
GO:0009505	IEA	PLAZA Integrative Orthology	plant-type cell wall	AT2G43570
GO:0048046	IEA	PLAZA Integrative Orthology	apoplast	AT2G43620

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000726	Glycoside hydrolase, family 19, catalytic
IPR016283	Glycoside hydrolase, family 19
IPR023346	Lysozyme-like domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.